PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548697.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 228aa MW: 25745.2 Da PI: 9.3011

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.7	9.8e-09	57	78	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + Cr f+r C yGd+C++ H XP_023548697.1 57 KVCRQFQRRRKCAYGDQCRYLH 78 68******************** PP
2	zf-CCCH	33.3	8.1e-11	138	161	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt+lC + tG C+yG+ C+FaH XP_023548697.1 138 KTRLCYPLQTTGSCPYGSVCRFAH 161 8*********************** PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MPSKSGIPPS NNRNIGYDHE LGCMSTPALN DTHRRLPSLR GIGFHEGPLS GRSNEMKVCR 60 QFQRRRKCAY GDQCRYLHEI PEKTRAFGSS TQNYEVRIVD SGHVMNRRRG LDQLEEVRSK 120 VQTEIVVGGE IPKPVRCKTR LCYPLQTTGS CPYGSVCRFA HEEAELQKLE PFIASQRGSV 180 SDASATTSAA TQAEFGTVCK NEEPRMKQFF KSKKSKRLIA IYADWLED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-16	C3H family protein