PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548704.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 282aa    MW: 32270.8 Da    PI: 5.1108
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEd++l+++++  G g+Wk+ ++  g+ R++k+c++rw +yl
   XP_023548704.1 14 RGRWTAEEDDKLKKYIEANGEGSWKSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding55.51.3e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ede ++++++ lG++ W++Ia +++ gRt++++k++w+++l
   XP_023548704.1  67 RGNITPQEDETILKLHTTLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MGKTPCCAKE GLRRGRWTAE EDDKLKKYIE ANGEGSWKSL PKNAGLLRCG KSCRLRWINY  60
LRTDLKRGNI TPQEDETILK LHTTLGNRWS LIAGHLPGRT DNEIKNYWNS HLSKKLYSSP  120
KKNSGIPKRT TSSRRGQQPS SIKLSILQKK NMKKAIPKEE GAQPNSIPEG PETSKPNQEE  180
EEEEEEEEEE EQATTTTSRL DCDDEEKKLE THNSTMKDPK LEEENWDLGS CEFTADAEKR  240
GNGFTIVESV EWCYSAWPSS MNSSFNNNEW LNWEWEDDGV LG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-68MYB family protein