PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548780.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 270aa    MW: 30719.5 Da    PI: 5.0646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-181966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd  l ++++ +G g+W+++ar+ g++Rt+k+c++rw++yl
   XP_023548780.1 19 KGPWTVEEDAVLFNYIHSHGEGRWNAVARCTGLKRTGKSCRLRWLNYL 66
                     79********************************************97 PP
2Myb_DNA-binding47.73.7e-1572115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
   XP_023548780.1  72 RGNITLQEQLLILDLHFRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 115
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MDVKMRGFTA EEAEEGVRKG PWTVEEDAVL FNYIHSHGEG RWNAVARCTG LKRTGKSCRL  60
RWLNYLRPSV KRGNITLQEQ LLILDLHFRW GNRWSKIAQY LPGRTDNEIK NYWRTRVQKQ  120
AKQLKCDVNS KQFRDAMRYV WMPRLLERIQ ASTDSVTDVV STSTDVVPSL EQTQPSPSRC  180
SSVNPHVTPS TSSSDSVSNK VQLQVFPVSD VTEDFSLVGT SEEEGMMMVV QQGCDGEATN  240
GWIGGGELLE DGFWDGEDMW FLLEQFGDDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.19e-81MYB family protein