PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548961.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 210aa    MW: 22827.3 Da    PI: 7.1114
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.91.6e-38111111100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p ++r da  +l+yeA ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_023548961.1  11 PCGACKFLRRKCVKGCIFAPYFDSEQgAAHFAAVHKVFGASNASKLLLRIPANKRLDACVTLCYEALARVRDPVYGCVAHIFSLQQQVVSLQAEL 105
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_023548961.1 106 AYIQAK 111
                     *99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSSAGVHGGG PCGACKFLRR KCVKGCIFAP YFDSEQGAAH FAAVHKVFGA SNASKLLLRI  60
PANKRLDACV TLCYEALARV RDPVYGCVAH IFSLQQQVVS LQAELAYIQA KLSTLQRLLP  120
PPLHSPSSTA RHNPLLETTL GSDMGLLPNV PMLLDPLQTQ LGCNETTSSF LNPIDHEDEM  180
DEDGELQSLA REFVSRYFPG VGFRPPCSQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-67LBD family protein