PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023549141.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 204aa    MW: 22715.3 Da    PI: 8.7063
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023549141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.71.5e-231461249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + e ks +qvtfskRr+g++KKA ELSvLC+aeva+i+fs+++k++ +
  XP_023549141.1 14 KLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 61
                    67899***************************************9866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MKKTLGRQKI EIKKLEKKSS KQVTFSKRRA GLFKKAGELS VLCGAEVAII VFSPNDKVFC  60
FGHPDVDVLL DRYLTGNLSP PKPAESYVPV AEFNRDFADL VLEFEAEKKR AEELIQASEE  120
SRNSGGFWWE EAVEGMRLEE LKEFRSSLMD LRAKVAEKVE KLTAVRIGGP LLPALPPPPP  180
PQPMTPPSFH LAGNHHVATG LGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-36M-type_MADS family protein