PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023549329.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family bHLH
Protein Properties Length: 376aa    MW: 42082.8 Da    PI: 8.4764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023549329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12313358655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el P      +k  s a++Le+A+eYIk Lq
  XP_023549329.1 313 SIAERMRRIRISERMKKLQELFPDM----DKQTSTADMLELAIEYIKGLQ 358
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MSLLCSPNFK FSNDEVKKYP DFMDCDSTNN HVSQQENPNS APHSLFASLV NGTEGFDSNN  60
NGGGGREDYR FIRSSSPGVE AFLSRFMASY NEETFDSGSD ERAVKQEMGE SVRQHNEFCN  120
QSSSMVNSAG GAQIGNLFRV MNSSDYGARN SANLFRQSSS PAGFFSNLAP QNGNAARDIQ  180
KFGSCSRKDV DVAYPYSRIG SQMNITGQSF ASTHMPPIAE EENKRMRAVR SSWDSSTIRD  240
LKRGRDNNGR TFPTSILLET QNADSGNDIR GLAHHLSLPI TFNKDPVEKF LRFEEPVRHQ  300
IRAKRGCATH PRSIAERMRR IRISERMKKL QELFPDMDKQ TSTADMLELA IEYIKGLQRQ  360
VKTLTDTKAK CTCSGQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-40bHLH family protein