PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549456.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 731aa MW: 80725.4 Da PI: 5.8414

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_023549456.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MEPNSSGEDL VFKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEALIKG IPVGQTLDID IPPPRPKRKP SNPYPRKTPI SKLGANDGKL 120 LTLVSSSQSK QILDLEKEPL NEATSGEEQA TSEMDTHDDN CSEVFTLSRE ANFFSWKNKN 180 SVPAQVKLNL NDLCAFREFV PSFKEPLHDK GRGKVSEFEI ASASQEKIVS VEKKEALSCV 240 LSGDEMQVAH NYPRHVPVHV VDGSLGANVQ ESVTDTPLQE SSFNPAMEVP GEHNIHRNPS 300 DSVSFERQNN APRCIYQSYP TVHPTPFTLL PPNQENYKSL LHMSSSFSNL VVSTLQQNPA 360 AHAIASLTAT CWPYVNPEAS VDSPMCDKES FRTKQMNSTP SMEAIATATV AAATAWWAAH 420 GLLPLCAPFH SAFTSSAISA PVAQPSDTCP NPESKDKAES SMQIDAEQSE ALTAQHSGSK 480 SPTHSSSDSE GSGGANANAN ATVKPAHDEK KPAEDEFHDS NKGKRGKQVD RSSCGSNTPS 540 GSDQEIDATE NNDKEEKEEK ELEMTCPASE SSNRRSRCIS NINESWKEVS DEVKRGRLAF 600 QALFTRDILP QSFSPSYDVE NENEKNENVE KDSNIIDKDS CASVMDLNSK ICGPSRDQVM 660 ERYTSATGDN NGEGKILTIG QGNGTPKGCR TGFKPYKRCS VEAKEKRMTT SSNHSEEGDQ 720 KRLRLEQKAT N

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MEPNSSGEDL VFKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEALIKG IPVGQTLDID IPPPRPKRKP SNPYPRKTPI SKLGANDGKL  120
LTLVSSSQSK QILDLEKEPL NEATSGEEQA TSEMDTHDDN CSEVFTLSRE ANFFSWKNKN  180
SVPAQVKLNL NDLCAFREFV PSFKEPLHDK GRGKVSEFEI ASASQEKIVS VEKKEALSCV  240
LSGDEMQVAH NYPRHVPVHV VDGSLGANVQ ESVTDTPLQE SSFNPAMEVP GEHNIHRNPS  300
DSVSFERQNN APRCIYQSYP TVHPTPFTLL PPNQENYKSL LHMSSSFSNL VVSTLQQNPA  360
AHAIASLTAT CWPYVNPEAS VDSPMCDKES FRTKQMNSTP SMEAIATATV AAATAWWAAH  420
GLLPLCAPFH SAFTSSAISA PVAQPSDTCP NPESKDKAES SMQIDAEQSE ALTAQHSGSK  480
SPTHSSSDSE GSGGANANAN ATVKPAHDEK KPAEDEFHDS NKGKRGKQVD RSSCGSNTPS  540
GSDQEIDATE NNDKEEKEEK ELEMTCPASE SSNRRSRCIS NINESWKEVS DEVKRGRLAF  600
QALFTRDILP QSFSPSYDVE NENEKNENVE KDSNIIDKDS CASVMDLNSK ICGPSRDQVM  660
ERYTSATGDN NGEGKILTIG QGNGTPKGCR TGFKPYKRCS VEAKEKRMTT SSNHSEEGDQ  720
KRLRLEQKAT N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	1e-96	MYB_related family protein