PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023549689.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C2H2
Protein Properties Length: 218aa    MW: 24243.3 Da    PI: 8.5867
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023549689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-057799123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C k F+++  L  H++ H
  XP_023549689.1 77 FECQYCFKEFTNSQALGGHQNAH 99
                    89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MMGKASLGCN FEDRESGLCS EGSCMEKKLK LFGFEVNPSE ELATNWRLKG SVGEANESVS  60
SSTTVSEQAM AINKPKFECQ YCFKEFTNSQ ALGGHQNAHK KERLKKKKMQ LQARKATLSY  120
YYLHPFQTPS NNFLYHFPSS YTHHHDSSQI SFNQNHAQFI HFDSFLPPER RLFTLTPADS  180
SSAAAAAKPV VFQSSSSSSL PPVASPSCKS LDLQLGLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108ERLKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-14C2H2 family protein