PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549809.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ERF

Protein Properties

Length: 430aa MW: 48222.4 Da PI: 4.6366

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549809.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.8	1.5e-19	80	131	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa a+++a++ ++ge XP_023549809.1 80 CKYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAIEAALAYDEAARTMYGE 131 79***999.******8...3.35**********************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MGLSDQYSDA ISLPTNSIRK RKSRSRRDRS TVAETLAKWK AYNECADSCN DEDKPIRKAP 60 AKGSKKGCMK GKGGPLNSQC KYRGVRQRTW GKWVAEIREP NRGSRLWLGT FPTAIEAALA 120 YDEAARTMYG ETARLNLPNI KNRGQLQGIL LEDYLGLRNS DSSTATSTCS GSTITTSNQS 180 EVCVPEEFTL RLPSNVKIED GEGESRTWDH SGHIPTTMCL ENPVKHEDVE AKYLEHHNNQ 240 TVLPDTELPS WDQLQNFQMD VMFEPRIGDQ ADDTAKPMSV EKKQVKNEDN DAKHLDQGND 300 QTVSAGTKIP SVDDLQNFQM DEMFDVDELL GLINSDCLYD PSILQGNVDG FNSTAPSQVG 360 DHGSEKPSSL SYQFQNPDAK LLGSLQHMEQ SPADVDYRFD FLKQGREEDM NAAADEYIRY 420 LNYEMDDMGF

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MGLSDQYSDA ISLPTNSIRK RKSRSRRDRS TVAETLAKWK AYNECADSCN DEDKPIRKAP  60
AKGSKKGCMK GKGGPLNSQC KYRGVRQRTW GKWVAEIREP NRGSRLWLGT FPTAIEAALA  120
YDEAARTMYG ETARLNLPNI KNRGQLQGIL LEDYLGLRNS DSSTATSTCS GSTITTSNQS  180
EVCVPEEFTL RLPSNVKIED GEGESRTWDH SGHIPTTMCL ENPVKHEDVE AKYLEHHNNQ  240
TVLPDTELPS WDQLQNFQMD VMFEPRIGDQ ADDTAKPMSV EKKQVKNEDN DAKHLDQGND  300
QTVSAGTKIP SVDDLQNFQM DEMFDVDELL GLINSDCLYD PSILQGNVDG FNSTAPSQVG  360
DHGSEKPSSL SYQFQNPDAK LLGSLQHMEQ SPADVDYRFD FLKQGREEDM NAAADEYIRY  420
LNYEMDDMGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	28	RKSRSRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40340.1	4e-36	ERF family protein