PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549810.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ERF

Protein Properties

Length: 419aa MW: 47130.2 Da PI: 4.6423

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549810.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.9	1.5e-19	69	120	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa a+++a++ ++ge XP_023549810.1 69 CKYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAIEAALAYDEAARTMYGE 120 79***999.******8...3.35**********************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MTPETIERKR KSRSRRDRST VAETLAKWKA YNECADSCND EDKPIRKAPA KGSKKGCMKG 60 KGGPLNSQCK YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTAIEAALAY DEAARTMYGE 120 TARLNLPNIK NRGQLQGILL EDYLGLRNSD SSTATSTCSG STITTSNQSE VCVPEEFTLR 180 LPSNVKIEDG EGESRTWDHS GHIPTTMCLE NPVKHEDVEA KYLEHHNNQT VLPDTELPSW 240 DQLQNFQMDV MFEPRIGDQA DDTAKPMSVE KKQVKNEDND AKHLDQGNDQ TVSAGTKIPS 300 VDDLQNFQMD EMFDVDELLG LINSDCLYDP SILQGNVDGF NSTAPSQVGD HGSEKPSSLS 360 YQFQNPDAKL LGSLQHMEQS PADVDYRFDF LKQGREEDMN AAADEYIRYL NYEMDDMGF

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MTPETIERKR KSRSRRDRST VAETLAKWKA YNECADSCND EDKPIRKAPA KGSKKGCMKG  60
KGGPLNSQCK YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTAIEAALAY DEAARTMYGE  120
TARLNLPNIK NRGQLQGILL EDYLGLRNSD SSTATSTCSG STITTSNQSE VCVPEEFTLR  180
LPSNVKIEDG EGESRTWDHS GHIPTTMCLE NPVKHEDVEA KYLEHHNNQT VLPDTELPSW  240
DQLQNFQMDV MFEPRIGDQA DDTAKPMSVE KKQVKNEDND AKHLDQGNDQ TVSAGTKIPS  300
VDDLQNFQMD EMFDVDELLG LINSDCLYDP SILQGNVDGF NSTAPSQVGD HGSEKPSSLS  360
YQFQNPDAKL LGSLQHMEQS PADVDYRFDF LKQGREEDMN AAADEYIRYL NYEMDDMGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	17	RKSRSRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40340.1	3e-36	ERF family protein