PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549955.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 426aa MW: 47689 Da PI: 6.5117

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.2	1.3e-15	86	145	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n+ k+ ++++lg ++ +e Aa+ ++ a++k++g XP_023549955.1 86 SIYRGVTRHRWTGRFEAHLWDkSSWNNiqnKKgRQVYLGAYDNEEAAARTYDLAALKYWG 145 57*****************777799977447***********************98 PP
2	AP2	52.2	1.5e-16	188	240	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g+ XP_023549955.1 188 SKYRGVARHHHNGRWEARIGRvF---G-SKYLYLGTYNTQEEAAAAYDMAAIEYRGA 240 89**99******99966...3.5***********************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MRIISPPVSS SSSSSSSSSS SSSSSSSSCV GSDSGIHNNN LAAPHRPQSE KTTAKRRRRN 60 QDETKCQIHN HNANGSNNAS PARRSSIYRG VTRHRWTGRF EAHLWDKSSW NNIQNKKGRQ 120 VYLGAYDNEE AAARTYDLAA LKYWGPGTTL NFPVESYTNE MEEMRKVSKE EYLASLRRQS 180 SGFSRGVSKY RGVARHHHNG RWEARIGRVF GSKYLYLGTY NTQEEAAAAY DMAAIEYRGA 240 NAVTNFDISN YIGRLQNKSS PDDPNCSPAS SQGEVVQQQH DVHQQQQQQQ QQIAFSGPPD 300 LQFSIENNPT MVVMDEPPTQ DDHDLHWSFL DTGLFVHVPD LPLEKSSELA DLYFDEIRFE 360 DDIGLMFEAS LENNKNCEGN NNNDDDNVGK KEVNNCNEKI RLFAATTTTS PSSSSITTSV 420 SCEFRV

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MRIISPPVSS SSSSSSSSSS SSSSSSSSCV GSDSGIHNNN LAAPHRPQSE KTTAKRRRRN  60
QDETKCQIHN HNANGSNNAS PARRSSIYRG VTRHRWTGRF EAHLWDKSSW NNIQNKKGRQ  120
VYLGAYDNEE AAARTYDLAA LKYWGPGTTL NFPVESYTNE MEEMRKVSKE EYLASLRRQS  180
SGFSRGVSKY RGVARHHHNG RWEARIGRVF GSKYLYLGTY NTQEEAAAAY DMAAIEYRGA  240
NAVTNFDISN YIGRLQNKSS PDDPNCSPAS SQGEVVQQQH DVHQQQQQQQ QQIAFSGPPD  300
LQFSIENNPT MVVMDEPPTQ DDHDLHWSFL DTGLFVHVPD LPLEKSSELA DLYFDEIRFE  360
DDIGLMFEAS LENNKNCEGN NNNDDDNVGK KEVNNCNEKI RLFAATTTTS PSSSSITTSV  420
SCEFRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-103	AP2 family protein