PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023550077.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 561aa MW: 63831.2 Da PI: 5.0404

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023550077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	46	1.1e-14	263	314	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r++W+ e ++F +a+++LG +k Pk il+lm+ ++Ltl +v+ HLQkY+ XP_023550077.1 263 SRVVWNVERRRKFSDALNKLG--DKCRPKLILKLMNEPCLTLRQVANHLQKYKA 314 79****************5..889************************85 PP
2	Myb_DNA-binding	22.9	1.9e-07	266	313	3	48
SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48 W e ++ da ++lG + ++k+I + m+ +tl q+ +++qky+ XP_023550077.1 266 VWNVERRRKFSDALNKLGDKcRPKLILKLMNePCLTLRQVANHLQKYK 313 677777789*******99********999**********7 PP
3	Response_reg	48.5	4.7e-17	22	127	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 +l+vd e l ++ l ++l+++ y +v+++ g+ al ++ke+ +Dl++ ++mp+md + +l + e + + +i++++ + + a++al G XP_023550077.1 22 ILVVDHETLSLKHLSSLLREQSY-NVTATGLGSIALSMIKERGdqFDLVMANVSMPDMDSFWFLHVLLEMN--IVVIFMSSVMDLDVATRALAEG 113 89*******************.***********998888******************9966..****************** PP ESEEEESS--HHHH CS Response_reg 94 akdflsKpfdpeel 107 a fl Kp+++++l XP_023550077.1 114 ACYFLQKPISKDDL 127 *********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MSQEMGHWVP DSLPSFAKNL HILVVDHETL SLKHLSSLLR EQSYNVTATG LGSIALSMIK 60 ERGDQFDLVM ANVSMPDMDS FWFLHVLLEM NIVVIFMSSV MDLDVATRAL AEGACYFLQK 120 PISKDDLKYV WQHVYRRNRN ISKLTHEANC GEKAKSGKES VGIQNDDTIV LSQSTDEVSI 180 NNNCSINYQL MSYNEEVQNQ PTNSHDTQVA SYFEGKRLTD DIEGTSKEKR VTYYSTPTNF 240 GDTRIDEDNR RMKEYYISSD NRSRVVWNVE RRRKFSDALN KLGDKCRPKL ILKLMNEPCL 300 TLRQVANHLQ KYKAQVESMK KGRENKLAPR REASKFNFSV RTQLPPPLVP KQPHDEANRS 360 TDGGSTSFIG GERFRLIAPR PVPNPTLPVS ANFANHGLIM LDQNYQHVNS NYYSVPYIIN 420 QTTPEVTSSC VFDETQFSDN RLDVVQQDLT AFKIENQEAM EFNGTSEGIQ LMSNNMAFPD 480 STNFDNIAAN FGNEGSQQQS AEYDYLLNFL EDDPHDFDSN LNLSDVDKYS EWLKNTVLEN 540 RSGPDSFLGD NAENFPMGNN P

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MSQEMGHWVP DSLPSFAKNL HILVVDHETL SLKHLSSLLR EQSYNVTATG LGSIALSMIK  60
ERGDQFDLVM ANVSMPDMDS FWFLHVLLEM NIVVIFMSSV MDLDVATRAL AEGACYFLQK  120
PISKDDLKYV WQHVYRRNRN ISKLTHEANC GEKAKSGKES VGIQNDDTIV LSQSTDEVSI  180
NNNCSINYQL MSYNEEVQNQ PTNSHDTQVA SYFEGKRLTD DIEGTSKEKR VTYYSTPTNF  240
GDTRIDEDNR RMKEYYISSD NRSRVVWNVE RRRKFSDALN KLGDKCRPKL ILKLMNEPCL  300
TLRQVANHLQ KYKAQVESMK KGRENKLAPR REASKFNFSV RTQLPPPLVP KQPHDEANRS  360
TDGGSTSFIG GERFRLIAPR PVPNPTLPVS ANFANHGLIM LDQNYQHVNS NYYSVPYIIN  420
QTTPEVTSSC VFDETQFSDN RLDVVQQDLT AFKIENQEAM EFNGTSEGIQ LMSNNMAFPD  480
STNFDNIAAN FGNEGSQQQS AEYDYLLNFL EDDPHDFDSN LNLSDVDKYS EWLKNTVLEN  540
RSGPDSFLGD NAENFPMGNN P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	275	ERRRKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	1e-37	ARR-B family protein