PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023550203.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 695aa MW: 77252.4 Da PI: 6.5428

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023550203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.1	2e-24	129	230	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_023550203.1 129 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGD 219 99**************************9543..445568********************************************..348 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++e++v+v+r+ XP_023550203.1 220 NGEMHVGVRRR 230 999****97 PP
2	Auxin_resp	99.8	3.8e-33	255	333	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha++t++ F v+Y+Pr+ +F+++++k+++a+++k+svGmRf m+fe+eds+err+sGt++g +d++p +WpnS WrsL XP_023550203.1 255 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGATDISP-HWPNSSWRSL 333 689*************6..89******************************************99.*******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MACNGGDSYT QSCVSTQGSG RNDLYTELWR ACAGPLVDVP RVDERVFYFP QGHMEQLEAS 60 TNLELNKRIP LCNLSSKILC RVIHIELLAD HESDEVYAQI TLMPESNQNE PNSLDPCRPE 120 PARPVVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TQATPTQDLV AKDLHGYEWR 180 FKHIFRGQPR RHLLTTGWST FVTSKRLSAG DSFVFLRGDN GEMHVGVRRR ARQQSSMPSS 240 VISSQSMHLG VLATASHAVT TQTRFVVYYK PRTCQFIISL NKYLEAVNNK FSVGMRFNMS 300 FEGEDSPERR FSGTIIGATD ISPHWPNSSW RSLRVQWDEQ TSILRPDRVS PWDIEPLTSS 360 AVTGLSQPIS KNKRPRQSTP AHDGADLPKP ALWDSGLAES HDGKQSSNAA ESRKGENNEL 420 CHHRETDAIS NRTCVSRTQA DGTWLSSTQS NSHKHPVNDM AQDYKTVPGC GWSFLSGPST 480 SHLVKLSDEQ ILDSTENGRK GETVASCRLF GIDLNHLAKL PAEKASYQPS SVSSDTDGRS 540 STLSVAQSDP KSDNLEVSVE RKSEPLQASL KETQSNQSSS ANTRSRTKVH MHGMAVGRAV 600 DLTILEGYDQ LIDELEKMFD VRGQLCARDK WEIVYTDDEG DMMLVGDDPW EEFCNMVRRI 660 FICSREQVKK MSSGSKQLTS IEVEGAAIIP DSPAV

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MACNGGDSYT QSCVSTQGSG RNDLYTELWR ACAGPLVDVP RVDERVFYFP QGHMEQLEAS  60
TNLELNKRIP LCNLSSKILC RVIHIELLAD HESDEVYAQI TLMPESNQNE PNSLDPCRPE  120
PARPVVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TQATPTQDLV AKDLHGYEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLSAG DSFVFLRGDN GEMHVGVRRR ARQQSSMPSS  240
VISSQSMHLG VLATASHAVT TQTRFVVYYK PRTCQFIISL NKYLEAVNNK FSVGMRFNMS  300
FEGEDSPERR FSGTIIGATD ISPHWPNSSW RSLRVQWDEQ TSILRPDRVS PWDIEPLTSS  360
AVTGLSQPIS KNKRPRQSTP AHDGADLPKP ALWDSGLAES HDGKQSSNAA ESRKGENNEL  420
CHHRETDAIS NRTCVSRTQA DGTWLSSTQS NSHKHPVNDM AQDYKTVPGC GWSFLSGPST  480
SHLVKLSDEQ ILDSTENGRK GETVASCRLF GIDLNHLAKL PAEKASYQPS SVSSDTDGRS  540
STLSVAQSDP KSDNLEVSVE RKSEPLQASL KETQSNQSSS ANTRSRTKVH MHGMAVGRAV  600
DLTILEGYDQ LIDELEKMFD VRGQLCARDK WEIVYTDDEG DMMLVGDDPW EEFCNMVRRI  660
FICSREQVKK MSSGSKQLTS IEVEGAAIIP DSPAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein