PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023550204.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 593aa    MW: 65824.5 Da    PI: 6.9487
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023550204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.41.6e-2427128199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kvlt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  XP_023550204.1  27 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGD 117
                     99****************************9543..445568************************************************..348 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++e++v+v+r+
  XP_023550204.1 118 NGEMHVGVRRR 128
                     999******97 PP
2Auxin_resp100.13.1e-33153231182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha++t++ F v+Y+Pr+   +F+++++k+++a+++k+svGmRf m+fe+eds+err+sGt++g +d++p +WpnS WrsL
  XP_023550204.1 153 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGATDISP-HWPNSSWRSL 231
                     689***************6..89**********************************************99.*********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    
MPESNQNEPN SLDPCRPEPA RPVVHSFCKV LTASDTSTHG GFSVLRKHAT ECLPPLDMTQ  60
ATPTQDLVAK DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLSAGDS FVFLRGDNGE  120
MHVGVRRRAR QQSSMPSSVI SSQSMHLGVL ATASHAVTTQ TRFVVYYKPR TCQFIISLNK  180
YLEAVNNKFS VGMRFNMSFE GEDSPERRFS GTIIGATDIS PHWPNSSWRS LRVQWDEQTS  240
ILRPDRVSPW DIEPLTSSAV TGLSQPISKN KRPRQSTPAH DGADLPKPAL WDSGLAESHD  300
GKQSSNAAES RKGENNELCH HRETDAISNR TCVSRTQADG TWLSSTQSNS HKHPVNDMAQ  360
DYKTVPGCGW SFLSGPSTSH LVKLSDEQIL DSTENGRKGE TVASCRLFGI DLNHLAKLPA  420
EKASYQPSSV SSDTDGRSST LSVAQSDPKS DNLEVSVERK SEPLQASLKE TQSNQSSSAN  480
TRSRTKVHMH GMAVGRAVDL TILEGYDQLI DELEKMFDVR GQLCARDKWE IVYTDDEGDM  540
MLVGDDPWEE FCNMVRRIFI CSREQVKKMS SGSKQLTSIE VEGAAIIPDS PAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0ARF family protein