PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023550816.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 367aa MW: 39393.8 Da PI: 10.5837

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023550816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.4	1.8e-14	110	155	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ ++ + k+lG+g+W+ I++ + ++Rt+ q+ s+ qky XP_023550816.1 110 KPWTEEEHRTFLAGLKKLGKGDWRGISKNFVTTRTPTQVASHAQKY 155 58*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MVRESPRKCS HCGLNGHNSR TCSNFAKGNN NNNYCVKLFG VNLMDNGDES MRKSLSMGNL 60 NIHVCNHNAA AAGNNVACYN AAVGDDGGYL SDGLIHNTKR KAALERKKGK PWTEEEHRTF 120 LAGLKKLGKG DWRGISKNFV TTRTPTQVAS HAQKYFLRKM NANDKKKRRA SLFDIPEIKN 180 NVSQECQASS SSMRANGETS QILLPKNSSE NQQQVSNLPT QLINRFPHLC LDTPHFVPST 240 TGSPASGVAN LHGIPYVVGV SPNNVPIIPL VKLGRRSSAV MAMPKSPIRT SSPNAAAAAA 300 AAALVAHPSG IPPSPRSSPQ RPLMVQLQAS AMAASFETDA LELKIGLPQS PQAKNLSSQT 360 SGAIRVI

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MVRESPRKCS HCGLNGHNSR TCSNFAKGNN NNNYCVKLFG VNLMDNGDES MRKSLSMGNL  60
NIHVCNHNAA AAGNNVACYN AAVGDDGGYL SDGLIHNTKR KAALERKKGK PWTEEEHRTF  120
LAGLKKLGKG DWRGISKNFV TTRTPTQVAS HAQKYFLRKM NANDKKKRRA SLFDIPEIKN  180
NVSQECQASS SSMRANGETS QILLPKNSSE NQQQVSNLPT QLINRFPHLC LDTPHFVPST  240
TGSPASGVAN LHGIPYVVGV SPNNVPIIPL VKLGRRSSAV MAMPKSPIRT SSPNAAAAAA  300
AAALVAHPSG IPPSPRSSPQ RPLMVQLQAS AMAASFETDA LELKIGLPQS PQAKNLSSQT  360
SGAIRVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	169	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	4e-60	MYB_related family protein