PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023550824.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 352aa MW: 37865.9 Da PI: 10.5428

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023550824.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.7e-14	110	155	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ ++ + k+lG+g+W+ I++ + ++Rt+ q+ s+ qky XP_023550824.1 110 KPWTEEEHRTFLAGLKKLGKGDWRGISKNFVTTRTPTQVASHAQKY 155 58*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MVRESPRKCS HCGLNGHNSR TCSNFAKGNN NNNYCVKLFG VNLMDNGDES MRKSLSMGNL 60 NIHVCNHNAA AAGNNVACYN AAVGDDGGYL SDGLIHNTKR KAALERKKGK PWTEEEHRTF 120 LAGLKKLGKG DWRGISKNFV TTRTPTQVAS HAQKYFLRKM NANDKKKRRA SLFDIPEIKN 180 NVSQECQASS SSMRANGETS QILLPKNSSE NQQQVSNLPT QLINRFPHLC LDTPHFVPST 240 TGSPASGVAN LHGIPYVLGR RSSAVMAMPK SPIRTSSPNA AAAAAAAALV AHPSGIPPSP 300 RSSPQRPLMV QLQASAMAAS FETDALELKI GLPQSPQAKN LSSQTSGAIR VI

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MVRESPRKCS HCGLNGHNSR TCSNFAKGNN NNNYCVKLFG VNLMDNGDES MRKSLSMGNL  60
NIHVCNHNAA AAGNNVACYN AAVGDDGGYL SDGLIHNTKR KAALERKKGK PWTEEEHRTF  120
LAGLKKLGKG DWRGISKNFV TTRTPTQVAS HAQKYFLRKM NANDKKKRRA SLFDIPEIKN  180
NVSQECQASS SSMRANGETS QILLPKNSSE NQQQVSNLPT QLINRFPHLC LDTPHFVPST  240
TGSPASGVAN LHGIPYVLGR RSSAVMAMPK SPIRTSSPNA AAAAAAAALV AHPSGIPPSP  300
RSSPQRPLMV QLQASAMAAS FETDALELKI GLPQSPQAKN LSSQTSGAIR VI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	169	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	3e-61	MYB_related family protein