PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551304.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 346aa MW: 38422.2 Da PI: 8.3308

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.4	6.5e-15	260	285	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg XP_023551304.1 260 FKTELCNKWQETGSCPYGDHCQFAHG 285 79***********************8 PP
2	zf-CCCH	18.4	3.9e-06	298	322	1	25
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H XP_023551304.1 298 YKTEVCRMVLA-GvVCPYGHRCHFRH 322 9********.66********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MHKSTTSASN TIAAGTTMSS SSQLKSQLQT NNVYASLYNS SIFAPKQSVP VSLPSTLYGD 60 STHTDSISAS KSINNHLYQT CVVQDHQEMV NRHSLCLTHL REATEEADAL RQENIHLRSI 120 NHELSKHLSL LIHASVQKQY GSSDQTPPFN FVEGFRGLSV AEKGASSSTW EDISDESPTS 180 VMEGGRVEGV EVERFSLPKS ISVRSNGYLK MAQGGSSQGG KVRVSSRPRT ASPVKQKVYV 240 QGVKEEEKPL ELEVYNQGMF KTELCNKWQE TGSCPYGDHC QFAHGIEELR PVIRHPRYKT 300 EVCRMVLAGV VCPYGHRCHF RHALTDQERL MGPLKPTCRT APKLDR

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MHKSTTSASN TIAAGTTMSS SSQLKSQLQT NNVYASLYNS SIFAPKQSVP VSLPSTLYGD  60
STHTDSISAS KSINNHLYQT CVVQDHQEMV NRHSLCLTHL REATEEADAL RQENIHLRSI  120
NHELSKHLSL LIHASVQKQY GSSDQTPPFN FVEGFRGLSV AEKGASSSTW EDISDESPTS  180
VMEGGRVEGV EVERFSLPKS ISVRSNGYLK MAQGGSSQGG KVRVSSRPRT ASPVKQKVYV  240
QGVKEEEKPL ELEVYNQGMF KTELCNKWQE TGSCPYGDHC QFAHGIEELR PVIRHPRYKT  300
EVCRMVLAGV VCPYGHRCHF RHALTDQERL MGPLKPTCRT APKLDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	1e-79	C3H family protein