PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551314.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 377aa MW: 41894.7 Da PI: 8.7191

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551314.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.2e-06	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_023551314.1 82 YVCEICNQGFQRDQNLQMHRRRH 104 9*********************9 PP
2	zf-C2H2	14.8	8.1e-05	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_023551314.1 161 WVCDKCSKAYAVHSDFKAHLKTC 183 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MLKPSSSSSS SSAAAAAAAS AASTPYSSAA PPLLPPPPPP PPPPNSDHGL TTKRKRRPAG 60 TPDPDAEVVS LSPKTLLESD RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKKPHTVDAI 120 KKKVFVCPEP TCLHHDPCHA LGDLVGIKKH FRRKHSNQKH WVCDKCSKAY AVHSDFKAHL 180 KTCGTRGHSC DCGRVFSRVE SFIEHQDACN IRQMRSDQWQ LMPLSLPLLQ TANPLRGFPI 240 LSSNKDHDLN LHLSSPSSAF LNLSIGSNKE PNDKRQLELA IEEKAYADEA RRDAKRQIEI 300 AEVEFTNAKM IRQQAQAELE KARILKEEAS RKMSSTIMEI TCETCRLHFH MSSVAAAEET 360 SLAISYMSSA TTEGDGE

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MLKPSSSSSS SSAAAAAAAS AASTPYSSAA PPLLPPPPPP PPPPNSDHGL TTKRKRRPAG  60
TPDPDAEVVS LSPKTLLESD RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKKPHTVDAI  120
KKKVFVCPEP TCLHHDPCHA LGDLVGIKKH FRRKHSNQKH WVCDKCSKAY AVHSDFKAHL  180
KTCGTRGHSC DCGRVFSRVE SFIEHQDACN IRQMRSDQWQ LMPLSLPLLQ TANPLRGFPI  240
LSSNKDHDLN LHLSSPSSAF LNLSIGSNKE PNDKRQLELA IEEKAYADEA RRDAKRQIEI  300
AEVEFTNAKM IRQQAQAELE KARILKEEAS RKMSSTIMEI TCETCRLHFH MSSVAAAEET  360
SLAISYMSSA TTEGDGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	58	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-140	C2H2 family protein