PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551326.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ERF

Protein Properties

Length: 392aa MW: 41369.2 Da PI: 5.383

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.9	1.7e-20	194	243	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g XP_023551326.1 194 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 243 7******.******7.....337***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MCSLKVANPR GIGSDLAQFP SGGAGDGDGD SGGDDPHRLL FYSQHDDGDY YSAVGEVSTI 60 VSTLTNVMSG QGAGEWSYGG SQGFATGFVS SSSSSSSSSS SSASASASAS ASASASSPLS 120 AYSSGSERSY ASAMSSCGGY WVGQKRMREE ESVQVKEEIP IPIPNTVASN PAAVLAFPVT 180 SNEAAASTGE RRRRYRGVRQ RPWGKWAAEI RDPHKAARVW LGTFDTAEAA ARAYDEAALR 240 FRGNRAKLNF PEHVRLIPPT QDITATASSA GPLFTPPQAA AFQTQNYGDY IEYSNLLQNS 300 GEFLGQPSSL QQMFYNAQLA PFPSSSSPVP APAPSMSSVS NSVFFPPPPQ QQQQMGFFRP 360 QPLQNQNQGG SNYFPATSWN DPGGQYPPPS SG

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MCSLKVANPR GIGSDLAQFP SGGAGDGDGD SGGDDPHRLL FYSQHDDGDY YSAVGEVSTI  60
VSTLTNVMSG QGAGEWSYGG SQGFATGFVS SSSSSSSSSS SSASASASAS ASASASSPLS  120
AYSSGSERSY ASAMSSCGGY WVGQKRMREE ESVQVKEEIP IPIPNTVASN PAAVLAFPVT  180
SNEAAASTGE RRRRYRGVRQ RPWGKWAAEI RDPHKAARVW LGTFDTAEAA ARAYDEAALR  240
FRGNRAKLNF PEHVRLIPPT QDITATASSA GPLFTPPQAA AFQTQNYGDY IEYSNLLQNS  300
GEFLGQPSSL QQMFYNAQLA PFPSSSSPVP APAPSMSSVS NSVFFPPPPQ QQQQMGFFRP  360
QPLQNQNQGG SNYFPATSWN DPGGQYPPPS SG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	195	ERRRRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	3e-16	ERF family protein