PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551335.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 1396aa MW: 153798 Da PI: 7.2956

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551335.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.6e-08	968	1008	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E l+++av +G++ ++ I+ ++g ++ qck ++ XP_023551335.1 968 YWTDGEKSLFIEAVSVYGKN-FSMISTHVG-SKSTDQCKVFFS 1008 5***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1396 aa Download sequence
MPPEPLPWDR KDFFKERKHE RSEFLGPVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG 60 GWHVFSDEYG HGYGPSMSFN NKMLENVSSR PSVSHGDGKY PRNGRESRSF SQRDWKGHSW 120 TTSNGSTNSG GRLQHDLNYD QRSVNDMLIY PSHSHSDFVN SRDKVKGQHD QVDDVNGLGT 180 NQRRDREYSV SSSGWKPLKW TRSGALSSRT STSGHSSSTR IAGALDSNEA KSETVLKNAP 240 QNLSPSADSG ECAMSSLPYD EATVRKKPRL GWGEGLAKYE KKKVEVPDAT AFTNVHAEST 300 HSLNSSLIEK GPRCSGFSDR TSPAPHSFVI SGSSPGGDEK SCGKASIDND VSDLHGSPGS 360 GFQNQYEGTS SVEKLNDFSI AKLCAPLIPL LQSSDSISED SSFMSSTALS KLLIYKKEIS 420 KVLETTESEI DLLENELKGL ISDSKGYFSF PLASRSFLEG DKYFDEKNDV TNTVATMPIT 480 SANTISKPME HSTSDLEEVH ADVKGKDRSV RLDVKESVIT KENLTISVCS VKDNVVASVD 540 NNMIIKSEDV TLEPISSDIY EFADEKGGDS VLDLILASNK ESACKASEAL TRLLPSNEHK 600 LDIWSTNAFS QNQCLVKERF AKRKRLLKFK ERVITLKYRA YQSLWKESFH VPPVRKLRAK 660 SQKKYQLSLW TNYSGYQKNR SSIRFRMPSP AGNLNHSVSN AEILKHMSMQ LSSPQIKQYR 720 TTLKMPALIL DQKDKMASRF ISNNGLVENP CAVEKERAMI NPWSSEEKEV FMEKLECFGK 780 DFGKIASFLD HKTTADCIEF YYKNHKSDCF EKTKKLEFGK KAKSTGNYLM TTGKKWNSEA 840 NAASLDMLGA AMVRAHKYSS SRSGGRTAYR TTQFDDDLSE RAKSFHGFGN EREKVAADVL 900 AGICGSLSSE ALGSCVTSNF DRGDGSQDLK CKKGGATTVL RRITNNVQQC VDDEIFSDES 960 CGEMDPSYWT DGEKSLFIEA VSVYGKNFSM ISTHVGSKST DQCKVFFSKA RKCLGLDVLC 1020 SAKKMPEDGN GHGINGGDCE AGVDTKDAFP CERVSSQMVD DLPKSVTCIS GGVTESKNLQ 1080 SIHQEVKESN PSSKTCSNAA VDAMVSDDAY NRKDGFLSGF DDDCQSVNST HDKNGLVLEQ 1140 RHTVVSDETA KEQGISALVA ALVGNDSNAE TKRVSVDTSS DRSDKAHSHT ADNSSMPLNT 1200 RVISLSKEEQ GCHHVRVHSR SLSDSEQSSR NGDLKLFGQI LTHSSSVPSS KSGSSENGNR 1260 TELHHKLKCR LKVNSHGNLI TAKFDRKNSS GQEEDAPSRS YGFWDGSRMR TGFSSLPDPN 1320 TLLSRYPTFD HCSKTASLIE QQPICNGQKS NSNQMSEVNS SKEGIIVGKN CNDDDDDDAS 1380 DTKLHCNKAA EGGGGS

Sequence ? help Back to Top

Protein Sequence Length: 1396 aa Download sequence

MPPEPLPWDR KDFFKERKHE RSEFLGPVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG  60
GWHVFSDEYG HGYGPSMSFN NKMLENVSSR PSVSHGDGKY PRNGRESRSF SQRDWKGHSW  120
TTSNGSTNSG GRLQHDLNYD QRSVNDMLIY PSHSHSDFVN SRDKVKGQHD QVDDVNGLGT  180
NQRRDREYSV SSSGWKPLKW TRSGALSSRT STSGHSSSTR IAGALDSNEA KSETVLKNAP  240
QNLSPSADSG ECAMSSLPYD EATVRKKPRL GWGEGLAKYE KKKVEVPDAT AFTNVHAEST  300
HSLNSSLIEK GPRCSGFSDR TSPAPHSFVI SGSSPGGDEK SCGKASIDND VSDLHGSPGS  360
GFQNQYEGTS SVEKLNDFSI AKLCAPLIPL LQSSDSISED SSFMSSTALS KLLIYKKEIS  420
KVLETTESEI DLLENELKGL ISDSKGYFSF PLASRSFLEG DKYFDEKNDV TNTVATMPIT  480
SANTISKPME HSTSDLEEVH ADVKGKDRSV RLDVKESVIT KENLTISVCS VKDNVVASVD  540
NNMIIKSEDV TLEPISSDIY EFADEKGGDS VLDLILASNK ESACKASEAL TRLLPSNEHK  600
LDIWSTNAFS QNQCLVKERF AKRKRLLKFK ERVITLKYRA YQSLWKESFH VPPVRKLRAK  660
SQKKYQLSLW TNYSGYQKNR SSIRFRMPSP AGNLNHSVSN AEILKHMSMQ LSSPQIKQYR  720
TTLKMPALIL DQKDKMASRF ISNNGLVENP CAVEKERAMI NPWSSEEKEV FMEKLECFGK  780
DFGKIASFLD HKTTADCIEF YYKNHKSDCF EKTKKLEFGK KAKSTGNYLM TTGKKWNSEA  840
NAASLDMLGA AMVRAHKYSS SRSGGRTAYR TTQFDDDLSE RAKSFHGFGN EREKVAADVL  900
AGICGSLSSE ALGSCVTSNF DRGDGSQDLK CKKGGATTVL RRITNNVQQC VDDEIFSDES  960
CGEMDPSYWT DGEKSLFIEA VSVYGKNFSM ISTHVGSKST DQCKVFFSKA RKCLGLDVLC  1020
SAKKMPEDGN GHGINGGDCE AGVDTKDAFP CERVSSQMVD DLPKSVTCIS GGVTESKNLQ  1080
SIHQEVKESN PSSKTCSNAA VDAMVSDDAY NRKDGFLSGF DDDCQSVNST HDKNGLVLEQ  1140
RHTVVSDETA KEQGISALVA ALVGNDSNAE TKRVSVDTSS DRSDKAHSHT ADNSSMPLNT  1200
RVISLSKEEQ GCHHVRVHSR SLSDSEQSSR NGDLKLFGQI LTHSSSVPSS KSGSSENGNR  1260
TELHHKLKCR LKVNSHGNLI TAKFDRKNSS GQEEDAPSRS YGFWDGSRMR TGFSSLPDPN  1320
TLLSRYPTFD HCSKTASLIE QQPICNGQKS NSNQMSEVNS SKEGIIVGKN CNDDDDDDAS  1380
DTKLHCNKAA EGGGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-124	MYB family protein