PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551337.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 1376aa MW: 151510 Da PI: 7.3438

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	948	988	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E l+++av +G++ ++ I+ ++g ++ qck ++ XP_023551337.1 948 YWTDGEKSLFIEAVSVYGKN-FSMISTHVG-SKSTDQCKVFFS 988 5***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1376 aa Download sequence
MPPEPLPWDR KDFFKERKHE RSEFLGPVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG 60 GWHVFSDEYG HGYGPSMSFN NKMLENVSSR PSVSHGDGKY PRNGRESRSF SQRDWKGHSW 120 TTSNGSTNSG GRLQHDLNYD QRDKVKGQHD QVDDVNGLGT NQRRDREYSV SSSGWKPLKW 180 TRSGALSSRT STSGHSSSTR IAGALDSNEA KSETVLKNAP QNLSPSADSG ECAMSSLPYD 240 EATVRKKPRL GWGEGLAKYE KKKVEVPDAT AFTNVHAEST HSLNSSLIEK GPRCSGFSDR 300 TSPAPHSFVI SGSSPGGDEK SCGKASIDND VSDLHGSPGS GFQNQYEGTS SVEKLNDFSI 360 AKLCAPLIPL LQSSDSISED SSFMSSTALS KLLIYKKEIS KVLETTESEI DLLENELKGL 420 ISDSKGYFSF PLASRSFLEG DKYFDEKNDV TNTVATMPIT SANTISKPME HSTSDLEEVH 480 ADVKGKDRSV RLDVKESVIT KENLTISVCS VKDNVVASVD NNMIIKSEDV TLEPISSDIY 540 EFADEKGGDS VLDLILASNK ESACKASEAL TRLLPSNEHK LDIWSTNAFS QNQCLVKERF 600 AKRKRLLKFK ERVITLKYRA YQSLWKESFH VPPVRKLRAK SQKKYQLSLW TNYSGYQKNR 660 SSIRFRMPSP AGNLNHSVSN AEILKHMSMQ LSSPQIKQYR TTLKMPALIL DQKDKMASRF 720 ISNNGLVENP CAVEKERAMI NPWSSEEKEV FMEKLECFGK DFGKIASFLD HKTTADCIEF 780 YYKNHKSDCF EKTKKLEFGK KAKSTGNYLM TTGKKWNSEA NAASLDMLGA AMVRAHKYSS 840 SRSGGRTAYR TTQFDDDLSE RAKSFHGFGN EREKVAADVL AGICGSLSSE ALGSCVTSNF 900 DRGDGSQDLK CKKGGATTVL RRITNNVQQC VDDEIFSDES CGEMDPSYWT DGEKSLFIEA 960 VSVYGKNFSM ISTHVGSKST DQCKVFFSKA RKCLGLDVLC SAKKMPEDGN GHGINGGDCE 1020 AGVDTKDAFP CERVSSQMVD DLPKSVTCIS GGVTESKNLQ SIHQEVKESN PSSKTCSNAA 1080 VDAMVSDDAY NRKDGFLSGF DDDCQSVNST HDKNGLVLEQ RHTVVSDETA KEQGISALVA 1140 ALVGNDSNAE TKRVSVDTSS DRSDKAHSHT ADNSSMPLNT RVISLSKEEQ GCHHVRVHSR 1200 SLSDSEQSSR NGDLKLFGQI LTHSSSVPSS KSGSSENGNR TELHHKLKCR LKVNSHGNLI 1260 TAKFDRKNSS GQEEDAPSRS YGFWDGSRMR TGFSSLPDPN TLLSRYPTFD HCSKTASLIE 1320 QQPICNGQKS NSNQMSEVNS SKEGIIVGKN CNDDDDDDAS DTKLHCNKAA EGGGGS

Sequence ? help Back to Top

Protein Sequence Length: 1376 aa Download sequence

MPPEPLPWDR KDFFKERKHE RSEFLGPVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG  60
GWHVFSDEYG HGYGPSMSFN NKMLENVSSR PSVSHGDGKY PRNGRESRSF SQRDWKGHSW  120
TTSNGSTNSG GRLQHDLNYD QRDKVKGQHD QVDDVNGLGT NQRRDREYSV SSSGWKPLKW  180
TRSGALSSRT STSGHSSSTR IAGALDSNEA KSETVLKNAP QNLSPSADSG ECAMSSLPYD  240
EATVRKKPRL GWGEGLAKYE KKKVEVPDAT AFTNVHAEST HSLNSSLIEK GPRCSGFSDR  300
TSPAPHSFVI SGSSPGGDEK SCGKASIDND VSDLHGSPGS GFQNQYEGTS SVEKLNDFSI  360
AKLCAPLIPL LQSSDSISED SSFMSSTALS KLLIYKKEIS KVLETTESEI DLLENELKGL  420
ISDSKGYFSF PLASRSFLEG DKYFDEKNDV TNTVATMPIT SANTISKPME HSTSDLEEVH  480
ADVKGKDRSV RLDVKESVIT KENLTISVCS VKDNVVASVD NNMIIKSEDV TLEPISSDIY  540
EFADEKGGDS VLDLILASNK ESACKASEAL TRLLPSNEHK LDIWSTNAFS QNQCLVKERF  600
AKRKRLLKFK ERVITLKYRA YQSLWKESFH VPPVRKLRAK SQKKYQLSLW TNYSGYQKNR  660
SSIRFRMPSP AGNLNHSVSN AEILKHMSMQ LSSPQIKQYR TTLKMPALIL DQKDKMASRF  720
ISNNGLVENP CAVEKERAMI NPWSSEEKEV FMEKLECFGK DFGKIASFLD HKTTADCIEF  780
YYKNHKSDCF EKTKKLEFGK KAKSTGNYLM TTGKKWNSEA NAASLDMLGA AMVRAHKYSS  840
SRSGGRTAYR TTQFDDDLSE RAKSFHGFGN EREKVAADVL AGICGSLSSE ALGSCVTSNF  900
DRGDGSQDLK CKKGGATTVL RRITNNVQQC VDDEIFSDES CGEMDPSYWT DGEKSLFIEA  960
VSVYGKNFSM ISTHVGSKST DQCKVFFSKA RKCLGLDVLC SAKKMPEDGN GHGINGGDCE  1020
AGVDTKDAFP CERVSSQMVD DLPKSVTCIS GGVTESKNLQ SIHQEVKESN PSSKTCSNAA  1080
VDAMVSDDAY NRKDGFLSGF DDDCQSVNST HDKNGLVLEQ RHTVVSDETA KEQGISALVA  1140
ALVGNDSNAE TKRVSVDTSS DRSDKAHSHT ADNSSMPLNT RVISLSKEEQ GCHHVRVHSR  1200
SLSDSEQSSR NGDLKLFGQI LTHSSSVPSS KSGSSENGNR TELHHKLKCR LKVNSHGNLI  1260
TAKFDRKNSS GQEEDAPSRS YGFWDGSRMR TGFSSLPDPN TLLSRYPTFD HCSKTASLIE  1320
QQPICNGQKS NSNQMSEVNS SKEGIIVGKN CNDDDDDDAS DTKLHCNKAA EGGGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-123	MYB family protein