PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023551483.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 303aa    MW: 33611.6 Da    PI: 6.584
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023551483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-1882134456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rqV +WFqNrRa++k
  XP_023551483.1  82 KKRLNLEQVKALEKSFELGNKLEPERKIQLAKALGLQPRQVAIWFQNRRARWK 134
                     4568889*********************************************9 PP
2HD-ZIP_I/II127.46e-4180170191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekk+rl+ eqvk+LE+sFe  +kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlE+dye+Lk+++++lk++n+ L++++++L++el
  XP_023551483.1  80 EKKKRLNLEQVKALEKSFELGNKLEPERKIQLAKALGLQPRQVAIWFQNRRARWKTKQLERDYEVLKKHFESLKADNDVLQAQNTKLHAEL 170
                     69**************************************************************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MASPHHSHSF LFQSRSADHH EYLPSASFNA IPSCPPHLYF HDGVVPVMMK RSMSFSGIEN  60
GCEEVNGDEG LSDDGLALGE KKKRLNLEQV KALEKSFELG NKLEPERKIQ LAKALGLQPR  120
QVAIWFQNRR ARWKTKQLER DYEVLKKHFE SLKADNDVLQ AQNTKLHAEL LALKTKDSGE  180
VAGGGATMNL KKENERCWSS DNSCDINLDI SKTQAAINGE EGGRACCEPG IKDLFPSAAF  240
RSGAITQLIQ RGSSRSTVDH PQVIQEESFS QMFNGIEEQQ QSAAAAAAAG FWPWGSDQNS  300
HFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.13e-79HD-ZIP family protein