PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023551518.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 170aa    MW: 19013.8 Da    PI: 7.77
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023551518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.54.8e-4361051100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++Cvlapyfp ++p kfa+vh++FGa nv+k+l++lpe++r da+sslvyeA+ar+rdP+yG++g i++lq+q+++l+a+la
  XP_023551518.1   6 PCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSLVYEANARIRDPIYGCTGSIFQLQNQVSELQAQLA 100
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++k+e
  XP_023551518.1 101 VAKAE 105
                     99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MVVLSPCAAC KILRRRCVDK CVLAPYFPPT EPLKFAAVHR IFGAGNVIKF LQELPENQRA  60
DATSSLVYEA NARIRDPIYG CTGSIFQLQN QVSELQAQLA VAKAEVHKMQ AQHANLLALM  120
CTETSQVRVE GREVPVLCQD HFPFSDLNPI PHYYKSSNIS WDSSWTSSSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-62LBD family protein