PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023551602.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 230aa    MW: 25601.1 Da    PI: 10.2971
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023551602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1971125256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +k+ +++k+q + Le+ F+ n+ ++ +++e LA+ l+L+ rqV vWFqNrRa+ k
  XP_023551602.1  71 KKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVEVWFQNRRARSK 125
                     788899***********************************************98 PP
2HD-ZIP_I/II109.13.2e-3571159189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+ lsk+q++lLE+ F++++ L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++++L+r++ +l+e+n+rL++e eeLr+
  XP_023551602.1  71 KKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMECQYLRRWFGSLTEQNRRLRRELEELRA 159
                     5999***********************************************************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MAFLPINSSS LDLSISMPGF ASSPPRPSAK ELDMNRVPEV GDGAEEEQAV AERTEEEEES  60
CSINNGGGQP KKKLSLSKHQ SRLLEDIFRH NHSLNPKQKE ALAMALQLKP RQVEVWFQNR  120
RARSKLKQTE MECQYLRRWF GSLTEQNRRL RRELEELRAT KVALPAVVSS HGRQPPIPES  180
TITMCPQCKR ITAATITSSR AAATQTAIGT TATPSKAVRS TLKLQQPSQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARSKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.19e-59HD-ZIP family protein