PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551683.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 409aa MW: 46765.3 Da PI: 7.2925

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	213	259	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed llv++v ++G + W+ Ia++++ gR +kqc++rw+++l XP_023551683.1 213 KGQWTPQEDRLLVQLVDEYGIKKWSQIAKMLQ-GRVGKQCRERWHNHL 259 799***************************.***********97 PP
2	Myb_DNA-binding	53.8	4.3e-17	265	307	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd +l++a+k G++ W+ Iar+++ gRt++ +k++w+ XP_023551683.1 265 KDTWSEEEDRILIEAHKDIGNK-WAEIARRLP-GRTENTIKNHWN 307 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MEFDSNFKDD LPLLSSFFSD KAESKPSLDD DDREFSGMEL GSSPSSSKGL FHSLHLHNID 60 HHHHYHHHNN NNHFQYLHQY FPVVTRSDSI DNSNNSHYDL DHHRRRLDGS LQSLLSEMPN 120 QCFEPKFEAF SNEVPKDHIF ESGAKLMHGF VGSGGVWTNF PGNFMPQFSQ PPNSHLGLGL 180 TDTIIGYDHI KKRKRIQLRK ENKPPKKLPN IIKGQWTPQE DRLLVQLVDE YGIKKWSQIA 240 KMLQGRVGKQ CRERWHNHLR PDIRKDTWSE EEDRILIEAH KDIGNKWAEI ARRLPGRTEN 300 TIKNHWNATK RRQNSKKLKG RDSDSNPNGS MLQNYIKSVT AGDRKISDSL PLLVDSHSPA 360 AEEGGGFCFG FGYGSGSGSG SGMECLNLMQ NEEMKSEMDL LELICQGNL

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MEFDSNFKDD LPLLSSFFSD KAESKPSLDD DDREFSGMEL GSSPSSSKGL FHSLHLHNID  60
HHHHYHHHNN NNHFQYLHQY FPVVTRSDSI DNSNNSHYDL DHHRRRLDGS LQSLLSEMPN  120
QCFEPKFEAF SNEVPKDHIF ESGAKLMHGF VGSGGVWTNF PGNFMPQFSQ PPNSHLGLGL  180
TDTIIGYDHI KKRKRIQLRK ENKPPKKLPN IIKGQWTPQE DRLLVQLVDE YGIKKWSQIA  240
KMLQGRVGKQ CRERWHNHLR PDIRKDTWSE EEDRILIEAH KDIGNKWAEI ARRLPGRTEN  300
TIKNHWNATK RRQNSKKLKG RDSDSNPNGS MLQNYIKSVT AGDRKISDSL PLLVDSHSPA  360
AEEGGGFCFG FGYGSGSGSG SGMECLNLMQ NEEMKSEMDL LELICQGNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	5e-69	MYB family protein