PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552057.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24384.9 Da    PI: 8.6401
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.81.8e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n   rqvtfskRr g++KKA+EL +LCda++a+i+fs +gkl++yss
  XP_023552057.1  9 KKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSS 59
                    689**********************************************96 PP
2K-box51.25.6e-18841671598
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +  +   a+L++e     +e+Rh++Ge+Le+L ++eL+qLe+ Le +l+++ ++K+e +l++i+  ++ke  l +en++Lr+++
  XP_023552057.1  84 QMEKSVCANLREEFAAKNKELRHMKGEELEELGIEELKQLEKLLEIGLNRVLETKDEKFLKEIDAVKEKEALLMKENQRLRNRV 167
                     555566789999999999***************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MTRQKIQIKK IDNIAARQVT FSKRRRGLFK KAHELATLCD ADIALIVFSA SGKLFDYSSS  60
SMHELLGRHN KLPEVNNFCQ PLSQMEKSVC ANLREEFAAK NKELRHMKGE ELEELGIEEL  120
KQLEKLLEIG LNRVLETKDE KFLKEIDAVK EKEALLMKEN QRLRNRVRAL NRDEQEQQAV  180
GVGGSSLGSK SITSNSSSSP NPSSQDCDDI SLKLGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-42MIKC_MADS family protein