PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552278.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28473.8 Da PI: 9.9682

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.4	8.1e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+lKKA ELS+LCda+v +iifsstgkly+yss XP_023552278.1 10 RIDNSTSRQVTFSKRRSGLLKKARELSILCDADVGLIIFSSTGKLYDYSS 59 8***********************************************96 PP
2	K-box	73.4	6.3e-25	81	174	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke....kelqeenkaLrkkl 98 + ++ + +++e+a Lk++++ +q+ +R+l+Ge+L+ Ls+k+Lq+Le+qLe slk +R kK+++l e+i +l++k + +++en +L kkl XP_023552278.1 81 NPVSELQFWKREAAGLKQQLHYMQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSEEITQLRQKVpptgNHMHQENLELYKKL 174 566789*********************************************************************7443367788888888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KARELSILCD ADVGLIIFSS TGKLYDYSSS 60 SIRSITDRYN KMKEEQNQLM NPVSELQFWK REAAGLKQQL HYMQECHRQL MGEELSGLSV 120 KDLQNLESQL EMSLKGVRVK KEKILSEEIT QLRQKVPPTG NHMHQENLEL YKKLDMIRKE 180 NAELQTKVYG PMEVDKTSSS TVHQFTFANR YGMPAPVHLQ LRQPQPQNNE TSIPGIKLGY 240 VLANCVMT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-88	MIKC_MADS family protein