PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552347.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Nin-like

Protein Properties

Length: 994aa MW: 109827 Da PI: 5.3886

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	589	640	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_023552347.1 589 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 640 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence
MTEPDSNHPS TLFPKSTHRS VPDDRTQLMD FDLDLDFPWP LDQIPSFASN PMSPFLVSTS 60 DHLGSPLWAF SEPDDDDDSK FPASTCSVLG TSNSNSVPQK PSENHKFKIL PVQSSSWGLI 120 PSENPDGYCL IKEKMAQALR YIKESSDQHV LAQVWAPVKS GGKLVLSTSG QPFVLDSQSN 180 GLHQYRMASL TFMFSLEPDQ DGYLGLPGRV FQQKLPEWTP NVQYYSSKEY PRLSHALHYN 240 VQGTLALPVF DPSGHSCLGV LELIMTSPKI NYAPEVDKVC KALEAVNLKS SEILDHPNNQ 300 ICNEGRQNAL AEILEVLTVV CETHNLPLAQ TWVPCRHRNV LAYGGGLKKS CTSFDGSCMG 360 RICMSATEVA SYVVDAHMWG FRDACLEHHL RKGQGVSGRA FLSHSSCFCG DITQFSKTEY 420 PLVHYALMFG LKSCFSICLR STFTGDDEYI LEFFLPPSIV DYQEQKTLLG ALMATMKQHF 480 YTLKVASGIN LEDEEGLVEI IQVSRNGGFE SRIEYIQIPR PMELPPHSDA MPNAGEVVAL 540 EKLQQQSLMV HDTPKDENNS ARDDESHNPA PCPQSKEVKK TSERKRGKAE KSISLEVLQQ 600 YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKRV IESVQGAEGA 660 FGISSLATSP LPVTVSSSSH PLTPEGSNQQ NFVASQPSDP QYKETNTSEG QTIDTWARLE 720 DQLHRGVLSP EEPIHEQNGY LPRFGNGLSN YRTGSGSREE SVGTPTSHGS CQGSPANDSG 780 VANNPISIPQ QQEQCVRRES PEVAFHPIDK LNISAPARPI PDTLVMVEPT EEAFGGMLIA 840 DAGSSKDLRN LCASVADAVL DEQVPEFCWS NPPDIALRQP MESVCHTVPY MSAGQDARRM 900 TIKASYKEDI IRFRIPLSSG IVELREEVAK RLKMEVGTFD IKYMDDDREW VLMACDADLQ 960 ECVEISKSSG SNIIRLLVHD ISVNLGSSCE STGE

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence

MTEPDSNHPS TLFPKSTHRS VPDDRTQLMD FDLDLDFPWP LDQIPSFASN PMSPFLVSTS  60
DHLGSPLWAF SEPDDDDDSK FPASTCSVLG TSNSNSVPQK PSENHKFKIL PVQSSSWGLI  120
PSENPDGYCL IKEKMAQALR YIKESSDQHV LAQVWAPVKS GGKLVLSTSG QPFVLDSQSN  180
GLHQYRMASL TFMFSLEPDQ DGYLGLPGRV FQQKLPEWTP NVQYYSSKEY PRLSHALHYN  240
VQGTLALPVF DPSGHSCLGV LELIMTSPKI NYAPEVDKVC KALEAVNLKS SEILDHPNNQ  300
ICNEGRQNAL AEILEVLTVV CETHNLPLAQ TWVPCRHRNV LAYGGGLKKS CTSFDGSCMG  360
RICMSATEVA SYVVDAHMWG FRDACLEHHL RKGQGVSGRA FLSHSSCFCG DITQFSKTEY  420
PLVHYALMFG LKSCFSICLR STFTGDDEYI LEFFLPPSIV DYQEQKTLLG ALMATMKQHF  480
YTLKVASGIN LEDEEGLVEI IQVSRNGGFE SRIEYIQIPR PMELPPHSDA MPNAGEVVAL  540
EKLQQQSLMV HDTPKDENNS ARDDESHNPA PCPQSKEVKK TSERKRGKAE KSISLEVLQQ  600
YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKRV IESVQGAEGA  660
FGISSLATSP LPVTVSSSSH PLTPEGSNQQ NFVASQPSDP QYKETNTSEG QTIDTWARLE  720
DQLHRGVLSP EEPIHEQNGY LPRFGNGLSN YRTGSGSREE SVGTPTSHGS CQGSPANDSG  780
VANNPISIPQ QQEQCVRRES PEVAFHPIDK LNISAPARPI PDTLVMVEPT EEAFGGMLIA  840
DAGSSKDLRN LCASVADAVL DEQVPEFCWS NPPDIALRQP MESVCHTVPY MSAGQDARRM  900
TIKASYKEDI IRFRIPLSSG IVELREEVAK RLKMEVGTFD IKYMDDDREW VLMACDADLQ  960
ECVEISKSSG SNIIRLLVHD ISVNLGSSCE STGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein