PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552380.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 764aa    MW: 84399.7 Da    PI: 6.082
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552380.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.4e-2175129256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +k +++t++q++eLe +F+++++p+ ++r eL+++l L+++qVk+WFqNrR+++k
  XP_023552380.1  75 KKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLCLETKQVKFWFQNRRTQMK 129
                     68899***********************************************999 PP
2START1762.3e-552815022206
                     HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     +a++a++elv +a+ ++p+W +s+     e +n de+ ++f++s +      ++ea r+s++v+ ++  lve+l+d + +W e+++    +a+t+
  XP_023552380.1 281 FALAAMNELVEMAQTDAPLWIRSRdggsrETLNLDEYSRTFPSSAGmkhinWTTEATRDSTMVIINSLALVETLMDAN-RWAEMFPcliaRATTI 374
                     5789*************************************99998**9999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vi+sg      galqlm ael +lsplvp R   f+R++rq+ +g w++vdvS+ + ++ ++   +  +++lpSg+++e+++ng skvtwveh+
  XP_023552380.1 375 DVITSGmcgtrnGALQLMHAELRVLSPLVPvRTLKFLRFCRQHADGLWAVVDVSIGEGSDSNT---FLGCRRLPSGCVVEDMPNGFSKVTWVEHT 466
                     ************************************************************875...99999************************ PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++ ++h+l+r+l++sg+ +g ++w+a lqrqce+
  XP_023552380.1 467 EYDETVIHQLYRQLISSGVGFGSQRWLANLQRQCEC 502
                     **********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    
MPIPSSIPSS SEFSTSTRKM DGYGEVCLLG DGFDPSGAVR MREDEYDSRS GSDNIDGALS  60
GDDQDANDEQ QPKGKKYHRH TPHQIQELEI FFKECPHPDD KQRSELSRRL CLETKQVKFW  120
FQNRRTQMKT QIERHENAIL KQENDKLRAE NSVMKDAIAN PTCNTCGGPS IPGHLSFEEH  180
HLRIENARLR EELHRLYTVT NKFLGWPVSS PFGNQGSSPS SDSCLELSVG RSGIGRSSTV  240
SDSMGLGNGH FGAGPAMPIS KPEIGVSGND IPLDRTIYVD FALAAMNELV EMAQTDAPLW  300
IRSRDGGSRE TLNLDEYSRT FPSSAGMKHI NWTTEATRDS TMVIINSLAL VETLMDANRW  360
AEMFPCLIAR ATTIDVITSG MCGTRNGALQ LMHAELRVLS PLVPVRTLKF LRFCRQHADG  420
LWAVVDVSIG EGSDSNTFLG CRRLPSGCVV EDMPNGFSKV TWVEHTEYDE TVIHQLYRQL  480
ISSGVGFGSQ RWLANLQRQC ECLAILMSST IPTEDPAGIS PGGRRSMLKL SQRMVDKFCS  540
GLCSSSLHKW DKLVVGNISE DVKVMARKSI NEPGEPPGIV LSAATSVWMP VTQQRLFAFL  600
QDDRLRSEWD ILSNSRPMLE MVRISKGQDA DNRVSLLRAN PMNANESTMF ILQETWTDIS  660
GSLVVYAPVD TASVSLMMRG GDSAYVSLLP SGFAILPNAT NNDKDASMKS GMNSGHDNGC  720
LLTVAFQILV NNLPTAKLTV ESVETVNNLI FCTIRKIKTA LQVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein