PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552456.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 280aa    MW: 31343.2 Da    PI: 8.0948
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65e-19115169256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q  +Le+ F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  XP_023552456.1 115 RKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 169
                     78889************************************************98 PP
2HD-ZIP_I/II130.18.7e-42115204191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k+q+++LE+sF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l
  XP_023552456.1 115 RKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELR-AL 204
                     69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MMAGNHDGLG LSLGLSFDSH PHRHLQLNLM PSWTNDASSD RTSETGRSLL RGIDVNRIPP  60
STADCEEEAA MSSPNSTVSS VSGKRSERET NGEDLDGDRD CFRGISDEED GETSRKKLRL  120
TKDQSAVLED SFKEHNTLNP KQKLALAKQL GLRPRQVEVW FQNRRARTKL KQTEVDCEFL  180
KRCCENLTDE NRRLQKEVQE LRALKLSPQF YMHMTPPTTL TMCPSCERVA VPPSTSAPTT  240
VTRVGQAQAQ AQAHHARPIH INPWASAIPA RPFNALHPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120SRKKLRL
2164172RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.15e-82HD-ZIP family protein