PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552561.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 230aa MW: 25903.3 Da PI: 8.881

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552561.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.6e-14	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEde l +v+ G ++W+ I++ + gR++k+c++rw++ XP_023552561.1 12 KGPWIPEEDEMLRMLVQSQGARNWSIISQSIH-GRSGKSCRLRWFNQ 57 79****************************.*********996 PP
2	Myb_DNA-binding	58	2.1e-18	64	108	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eEde + +a++++G++ W+tIar ++ gRt++ +k++w++ XP_023552561.1 64 RRAFTAEEDEVITEAHAKYGNK-WATIARLLN-GRTDNAIKNHWNST 108 678*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MGSKKGKIDR VKGPWIPEED EMLRMLVQSQ GARNWSIISQ SIHGRSGKSC RLRWFNQLCP 60 GVERRAFTAE EDEVITEAHA KYGNKWATIA RLLNGRTDNA IKNHWNSTLK RKFCSIAEKK 120 TDCVSQGSTI SVSNQCLSPS GSETSDSIRS SDMEPSTQLT LSLPGTELWP VTQQQSISSS 180 PVKSEEKQKG KRTCFGEELL CVMQKMIKEE VRNYVAQYEE VRNGKKGIDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-63	MYB family protein