PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552669.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 307aa    MW: 34764.6 Da    PI: 4.6288
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-1856108456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++  eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_023552669.1  56 KRRLGVEQVKALEKNFEVENKLEPERKLKLAQELGLQPRQVAVWFQNRRARWK 108
                     5567889*********************************************9 PP
2HD-ZIP_I/II127.36.5e-4154146193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl  eqvk+LE++Fe e+kLeperK +la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk + e+L++++++L +e++e
  XP_023552669.1  54 EKKRRLGVEQVKALEKNFEVENKLEPERKLKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKTNYDNLKLSFEALQNDNQALLKEIRE 146
                     69**************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MKRRSDSMAA LISTSPTSDQ EQSPRNKNSN HVYEMEFQCM LDGFDEEELG HVSEKKRRLG  60
VEQVKALEKN FEVENKLEPE RKLKLAQELG LQPRQVAVWF QNRRARWKTK QLERDYGVLK  120
TNYDNLKLSF EALQNDNQAL LKEIRELKAK IQEDNSEMLV PVDSENALIE QTKPEITDDF  180
SVPPARSFNN NGGEGDEPPT KDGSSDSDSS AILNEDYSPT AGVSSPGVLQ NNNHFMAGEI  240
PTSSPSIATA GVKLNCATTA LNYLQFQKGY QQTQMMFPKM EEHNFFGGEE ACNFFSDEQA  300
PSLHWWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15584KKRRLGVEQVKALEKNFEVENKLEPERKLK
2103111RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-75HD-ZIP family protein