PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552885.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 265aa MW: 29569 Da PI: 4.8669

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552885.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.5	3.1e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvt+skRrng++KKA+ELSvLCd+++a+i+fs++ +l +s XP_023552885.1 9 KRIENNTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSSRLSHFS 58 79********************************************9997 PP
2	K-box	16.8	2.9e-07	109	178	8	77
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 ++++ e+lqqe+a L+ e++ ++++R + + + s e+++ e++L + l +i ++K+++l +++ XP_023552885.1 109 TSSNSNVEELQQEVATLRHELQLAEQQLRLFEPDPFSFTSNGEIESCEKNLLDTLARIAQRKKDVLNSHL 178 368899***********************************************************98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MGRVKLQIKR IENNTNRQVT YSKRRNGLIK KAYELSVLCD IDIALIMFSP SSRLSHFSGR 60 RRIEDVLARY INLPDHDRGS VVQNKEFLLG TLNNLKTEND IALQLANPTS SNSNVEELQQ 120 EVATLRHELQ LAEQQLRLFE PDPFSFTSNG EIESCEKNLL DTLARIAQRK KDVLNSHLSP 180 YDPPNGIQLY LDSQDGIASS FENDVANWLP ENGQNQNQIC VAAESSSIPQ SGQYPGTVYD 240 QVTQAGNMNV GSCNIGGCDM GNPND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-87	MIKC_MADS family protein