PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023553027.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 328aa    MW: 36086.1 Da    PI: 6.987
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023553027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.57.5e-3033134199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l++ed+ g+ W+++++y+ +s++yv+tkGW++Fvk+++L++gD+v F++ g  + +
  XP_023553027.1  33 FDKVVTPSDVGKLNRLVIPKQHAEKFfpldSSSNEKGLLLSFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQR-GVCKDR 126
                     89****************************66677899*************************************************4.347777 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     +++ ++r+
  XP_023553027.1 127 FFIDWRRR 134
                     89999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MDFGSSSRFH HQHQEIMEES SNSGVYIEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKFFP  60
LDSSSNEKGL LLSFEDRCGK LWRFRYSYWT SSQSYVMTKG WSRFVKEKRL DAGDIVSFQR  120
GVCKDRFFID WRRRPPHTAV ETAFHHHGGG GCGGGGGGGY GGYGGGGQFP PYQFQLHGQW  180
NPVATPLSLH RDHAFHLQQN NSVHNNVSLF HTTYNHQPIG GGGCDGGASV FYQLRSPAAL  240
PGVDDGGGHG IGKAAAAKTL RLFGVNMECV VSEDSDDDEG DKVTTSTSTT LSSQFCVYNG  300
MPMSMPTSNP DVPITDFFEK GKSLDFGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-61B3 family protein