PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023553092.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 694aa MW: 77637.5 Da PI: 7.1916

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023553092.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.4e-23	124	224	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + ++ +++l+ +d+++ +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_023553092.1 124 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAKDLHSYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 214 99**************************9643..445569********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_023553092.1 215 NGELRVGVRR 224 999***98 PP
2	Auxin_resp	104.8	1e-34	250	328	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha+st + F v+Y+Pra s+F+v+++k+ +a+++k+ vGmRfkm+fe+e+s+err+sGt+vgv d++p +WpnSkWrsL XP_023553092.1 250 ASHAVSTLTRFVVYYKPRA--SQFIVSLNKYIEAMNRKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISP-HWPNSKWRSL 328 689*************8..9******************************************999.*******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MANRGGGSFS SQGGGGDGLY TELWKASAGP LVEVPRVNDK VFYFPQGHME QLEASTNHEL 60 NQKHPLFKLS SKILCRVVDV RLMAEQETDE VYAQITLMPD SNQEEPTNPD PSPPECRKPK 120 VHSFCKVLTA SDTSTHGGFS VLRKHATECL PPLDMTQQTP TQELVAKDLH SYEWRFKHIF 180 RGQPRRHLLT TGWSTFVTSK RLVAGDSFVF LRGENGELRV GVRRLARQQT SMPSSVISSD 240 SMHLGVLATA SHAVSTLTRF VVYYKPRASQ FIVSLNKYIE AMNRKFLVGM RFKMRFEGEE 300 SPERRFSGTI VGVDDISPHW PNSKWRSLRI QWDELASIPR PDRVSPWEIE PFVAPTSPSI 360 PQSVSVKNKR LRPPLDIPDS DNSTVTTLRH PGSTQSHDDR TQLSVTAAEM KRFENHATWN 420 YKQTDVSSIG NSISRTPKEG SWLASPNGSV SQHRLQNLTD DRNSNYVWST VFSGAPAAQS 480 TCPAPHPSNP KSSDEVNDLG EKGRKTEVAP SCRLFGIDII GHSKSPVPPE MAADQPISAP 540 NEITDAEQNS DQPKASKERK LGLLQVPPKE IQHKQSSSTN SRSRTKVQMQ GMAVGRAVDL 600 TMLEGYGQLI DELEKMFDIK GELHPRDKWE IVFTDDEGDT MLMGDYPWQE FCNMVRRIYI 660 WSSQDVKMMS SVSKLTMSAM ECDGTVITSE SADS

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MANRGGGSFS SQGGGGDGLY TELWKASAGP LVEVPRVNDK VFYFPQGHME QLEASTNHEL  60
NQKHPLFKLS SKILCRVVDV RLMAEQETDE VYAQITLMPD SNQEEPTNPD PSPPECRKPK  120
VHSFCKVLTA SDTSTHGGFS VLRKHATECL PPLDMTQQTP TQELVAKDLH SYEWRFKHIF  180
RGQPRRHLLT TGWSTFVTSK RLVAGDSFVF LRGENGELRV GVRRLARQQT SMPSSVISSD  240
SMHLGVLATA SHAVSTLTRF VVYYKPRASQ FIVSLNKYIE AMNRKFLVGM RFKMRFEGEE  300
SPERRFSGTI VGVDDISPHW PNSKWRSLRI QWDELASIPR PDRVSPWEIE PFVAPTSPSI  360
PQSVSVKNKR LRPPLDIPDS DNSTVTTLRH PGSTQSHDDR TQLSVTAAEM KRFENHATWN  420
YKQTDVSSIG NSISRTPKEG SWLASPNGSV SQHRLQNLTD DRNSNYVWST VFSGAPAAQS  480
TCPAPHPSNP KSSDEVNDLG EKGRKTEVAP SCRLFGIDII GHSKSPVPPE MAADQPISAP  540
NEITDAEQNS DQPKASKERK LGLLQVPPKE IQHKQSSSTN SRSRTKVQMQ GMAVGRAVDL  600
TMLEGYGQLI DELEKMFDIK GELHPRDKWE IVFTDDEGDT MLMGDYPWQE FCNMVRRIYI  660
WSSQDVKMMS SVSKLTMSAM ECDGTVITSE SADS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein