PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023553124.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 257aa    MW: 29518.6 Da    PI: 6.1629
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023553124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-193992456
                    -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++f++eq++ Le+ F++ +++++ +++ +LA++lgL+ rq+ +WFqNrRa++k
  XP_023553124.1 39 KRRFSDEQIRSLESIFYSsDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWK 92
                    578**************98**********************************9 PP
2HD-ZIP_I/II1149.2e-3738130293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +krr+s+eq+++LE+ F +++ kL++++Kv+la+eLglqprq+a+WFqnrRAR+k+k++E+++++L+++yd+l+++ ++L++e+++L ++l++
  XP_023553124.1  38 NKRRFSDEQIRSLESIFYSSDsKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQK 130
                     69***************88777********************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MEREEYFIVP NLETAAVASS QTCSTPRRRR KKKTNNMNKR RFSDEQIRSL ESIFYSSDSK  60
LDSRKKVQLA TELGLQPRQI AIWFQNRRAR WKSKEMENNF RSLRANYDNL ASQFKTLQEE  120
KNSLLSQLQK LSELVQEGPR EGHYSNEIAK TIYETKEKPQ SFHDELGQSG VTYLNNNYNT  180
DKRGTENGEG DRGLEMTHSS EGISNDISHA VEQACQLLNP NSSFESSENW CGFDSDGGGI  240
IFECQPCSSL QELSFWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12733RRRRKKK
22741RRRRKKKTNNMNKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.27e-33HD-ZIP family protein