PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023553162.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 272aa MW: 30659.7 Da PI: 6.6781

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023553162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9.4e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +lv ++++G g+W++ + g++R++k+c++rw +yl XP_023553162.1 15 RGPWTHEEDHKLVSFITKHGYGSWRSLPVLAGLNRCGKSCRLRWTNYL 62 89********************************************97 PP
2	Myb_DNA-binding	53.7	4.7e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+++++d++ lG++ W+ Ia++++ gRt++++k++w+++l XP_023553162.1 68 RGKFSQQEQQIILDLHSILGNK-WSVIASHLP-GRTDNEIKNFWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MGRSPPSSNQ IGLKRGPWTH EEDHKLVSFI TKHGYGSWRS LPVLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSQQEQQIIL DLHSILGNKW SVIASHLPGR TDNEIKNFWN THLKKRLIKM 120 GFDPVTHMPT IYDNTLSAHH LPPPNLENFL LFDLPTLKQQ LQALQMATLQ EYLQLPQLPP 180 PPFTPTFHLQ YDRNMSGPYA NLPDLEVFGA SDDPTWTAVS GDQSGASMWV SSSSSNAPSP 240 LPPVEANSES ESAPLTDELM FNDYSLFSDI DP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65230.1	3e-72	MYB family protein