PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023553170.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 329aa MW: 36221.9 Da PI: 5.2342

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023553170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.8	5.5e-15	82	133	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P + kK + a+i +veYIk+Lq XP_023553170.1 82 QRMSHITVERNRRKQMNEHLSVLRSLMPCF---YVKKGDQASIIGGVVEYIKELQ 133 79*************************9...9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MVDNLADFFQ QNEEFVDHTT NPQLEGYDLF SIFDSLENVA EFSMIEDDTE LETSPKTKRL 60 KLNGSAMAGV SSSEDANPDG AQRMSHITVE RNRRKQMNEH LSVLRSLMPC FYVKKGDQAS 120 IIGGVVEYIK ELQQVLQSLE AKKQRKVYSE VLSPRVVSSP RPLPMSPRKP PPLSPRLNLP 180 ISPRTPQPTS PYSKPPRLQQ PPTTDMANNN ISTVEPSPCN SSSTTNSSID NGNNGNNGNN 240 DLVANSKSGI AEVEVKFTGP NVVLKTVSAP IPGQAVKIIA ALEQLSLEIL HVKITTVDDT 300 MFNSFTIKIG IECQLSAEEL AHQIQQTFC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	94	RMSHITVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	4e-45	bHLH family protein