PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023553536.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB_related
Protein Properties Length: 330aa    MW: 37040 Da    PI: 5.8558
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023553536.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.6e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l+ +v ++G g W+tI +          R+  ++k++w++
   XP_023553536.1  5 KQKWTNEEEAALKAGVVKHGAGKWRTILKDPEfssvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MGAPKQKWTN EEEAALKAGV VKHGAGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNMSVMA  60
NGWGSREKAR LALKRLHAPK KDENILARSV AVQSEDELPE AKSVSLSSDI KLIAGPKRSN  120
VRKEEEEEEE EDDDEEEETE AERTERDARY DCHRLDNLII EAITTLREPG GSNKTKITSY  180
IEDQYWAPPD FKRLLSSKLK FLTASGKLVK VKRKYRLPPV MPSSERRSSM LFLDDHQRAS  240
LRTDKDEMCI LAKAQIDLEL AKMRTMTSQE AAAAAAHAVA EAEAAIAEAE EAAREAEAAE  300
ADAEAAQSFA EAAMKTLKGR NLPKMQMIRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.14e-85MYB_related family protein