PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023553711.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 348aa MW: 37863.2 Da PI: 6.9305

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023553711.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.5e-10	165	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_023553711.1 165 SHSLAERARREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 212 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MGFPGFMSGG GGSGGGMSLV EMVMGAVKPD PGLGGKFDPS LLLNATAYEL NSSLSRTSSC 60 PPAVTPAVSA AGRESFKKRK AEKVHTTAAA PTNNNKNKVD KNSKEKRIKT SSEEEELSKN 120 NNSSTTTNNN RETSADTSKE NSKASEVQKP GYIHVRAGRG QATDSHSLAE RARREKISER 180 MKYLQDLVPG CNKITGKAGM LDEIINYVQS LQRQVEFLSM KLSTVNPRLE FNVDDLFTKE 240 VFPQAIGEMS SEMTDPSSYL QFNPNNQQVV SCSGLEIGIN TSDIALRRSF PENFVDSSCL 300 TQFQTSSGWD MDLQNLYNVG FDQGRSSNAF SSHPYTGTIE GGNIKMEM

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MGFPGFMSGG GGSGGGMSLV EMVMGAVKPD PGLGGKFDPS LLLNATAYEL NSSLSRTSSC  60
PPAVTPAVSA AGRESFKKRK AEKVHTTAAA PTNNNKNKVD KNSKEKRIKT SSEEEELSKN  120
NNSSTTTNNN RETSADTSKE NSKASEVQKP GYIHVRAGRG QATDSHSLAE RARREKISER  180
MKYLQDLVPG CNKITGKAGM LDEIINYVQS LQRQVEFLSM KLSTVNPRLE FNVDDLFTKE  240
VFPQAIGEMS SEMTDPSSYL QFNPNNQQVV SCSGLEIGIN TSDIALRRSF PENFVDSSCL  300
TQFQTSSGWD MDLQNLYNVG FDQGRSSNAF SSHPYTGTIE GGNIKMEM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	106	KKRKAEKVHTTAAAPTNNNKNKVDKNSKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	2e-56	bHLH family protein