PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023553873.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 311aa    MW: 35139.3 Da    PI: 9.6468
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023553873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64.1e-17128217198
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f+k +++s+v+   +l lp +f+++h      e+ +ltl de+ ++++ k+  +k++    l++GW++F  +++L +gD++vF+l++ +ef  +v
  XP_023553873.1 128 FVKPMLQSHVTGGFWLGLPVHFCKAHlP---LEDEMLTLVDEDENEFQTKYLAEKTG----LSGGWRGFSIDHQLVDGDTLVFQLTKPTEF--KV 213
                     89************************53...34558***************555555....***********************9876666..88 PP

                     EEE- CS
              B3  95 kvfr 98 
                      ++r
  XP_023553873.1 214 YIIR 217
                     8887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MVESNLTYEE CRRQRLEENK KRMEELNLNK LADALKSSSP KSSPTKQLKR PRQPLDISSL  60
SVRRSSRFAD KPPPSYKEEP IEPLAGLRRT YQRRDLLNRV YASDVERQYA IDRARDLQSS  120
LESRYPSFVK PMLQSHVTGG FWLGLPVHFC KAHLPLEDEM LTLVDEDENE FQTKYLAEKT  180
GLSGGWRGFS IDHQLVDGDT LVFQLTKPTE FKVYIIRAYN LEDKENTHGD SDVTQLERNG  240
KGNTGSGKGD HGEDSNVSLL EKSGKKVTRS SGRKTRANKS EDKAANGEDS GVSQLETSGK  300
RTTRSASKGK K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-88B3 family protein