PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554149.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 522aa MW: 57250.4 Da PI: 7.7293

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554149.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.4	7.5e-11	165	189	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_023554149.1 165 GEKDCAHYMLTRTCKFGDSCKFDHP 189 7889********************8 PP
2	zf-CCCH	35.6	1.5e-11	217	242	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t Ck+G+rCkF+H++ XP_023554149.1 217 GEPDCPYFLKTQRCKFGSRCKFNHPR 242 5799********************96 PP
3	zf-CCCH	29.5	1.3e-09	264	288	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+ +tG Ck+ +CkF+H++ XP_023554149.1 264 EPLCAFYVKTGNCKFRVNCKFHHPK 288 79*********************96 PP
4	zf-CCCH	36.9	6.2e-12	341	366	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG +C+++H+ XP_023554149.1 341 PGEVDCPFYLKTGSCKYGTTCRYNHP 366 57899********************9 PP
5	zf-CCCH	40.9	3.3e-13	421	444	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG Ck+G+rCkF+H+ XP_023554149.1 421 QIECDYYMKTGDCKFGERCKFHHP 444 568********************8 PP
6	zf-CCCH	40.4	4.7e-13	473	495	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCkyG++CkF H+p XP_023554149.1 473 ICPYYLKTGTCKYGSTCKFDHPP 495 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MANQLHGYSS VYGAGPATST ATATATTPLP AAYSSSRSLS DIVSGRYLVS DSLASGFSIK 60 HSFIDRGTTM YSTQNEALRL SAADIVPRTS HSVSQFSWPG SDAATALDSV VSGIQRSSDV 120 LYDQTVLGSY NTLGQSEAWY TSNSLAKRPR FESTSNLHVY PQRPGEKDCA HYMLTRTCKF 180 GDSCKFDHPI WVPDGGIPDW KEVPQITSSE DLPERLGEPD CPYFLKTQRC KFGSRCKFNH 240 PRDTSESVGA EKSDVSSLPE RPSEPLCAFY VKTGNCKFRV NCKFHHPKDI QILSGEVNGN 300 SEQTLMEANT EGRIGDFKLV KPPVSFSPAL IHNSKGLPIR PGEVDCPFYL KTGSCKYGTT 360 CRYNHPDRNA INPSTPAMVS AANMNIGISN PSNAIYQAVD PRLIQPLLGS SSSIYPRRPG 420 QIECDYYMKT GDCKFGERCK FHHPIDRSAA MQASQHNVKL TLAGLPRRED AIICPYYLKT 480 GTCKYGSTCK FDHPPPGEVM AMVAVQLVPG KEGEERIDEP TS

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MANQLHGYSS VYGAGPATST ATATATTPLP AAYSSSRSLS DIVSGRYLVS DSLASGFSIK  60
HSFIDRGTTM YSTQNEALRL SAADIVPRTS HSVSQFSWPG SDAATALDSV VSGIQRSSDV  120
LYDQTVLGSY NTLGQSEAWY TSNSLAKRPR FESTSNLHVY PQRPGEKDCA HYMLTRTCKF  180
GDSCKFDHPI WVPDGGIPDW KEVPQITSSE DLPERLGEPD CPYFLKTQRC KFGSRCKFNH  240
PRDTSESVGA EKSDVSSLPE RPSEPLCAFY VKTGNCKFRV NCKFHHPKDI QILSGEVNGN  300
SEQTLMEANT EGRIGDFKLV KPPVSFSPAL IHNSKGLPIR PGEVDCPFYL KTGSCKYGTT  360
CRYNHPDRNA INPSTPAMVS AANMNIGISN PSNAIYQAVD PRLIQPLLGS SSSIYPRRPG  420
QIECDYYMKT GDCKFGERCK FHHPIDRSAA MQASQHNVKL TLAGLPRRED AIICPYYLKT  480
GTCKYGSTCK FDHPPPGEVM AMVAVQLVPG KEGEERIDEP TS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein