PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554448.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 517aa MW: 56571 Da PI: 6.254

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.8e-17	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_023554448.1 38 KGPWTAAEDGILIEYVKKHGEGNWNAVQKHTGLARCGKSCRLRWANHL 85 79******************************************9986 PP
2	Myb_DNA-binding	47.7	3.5e-15	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ +++++++lG++ W++ a+ ++ gRt++++k++w++ XP_023554448.1 91 KGSFSQEEERVIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 134 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MVESKGEKGR SEGEHHHHLA GGDGGDGGGD GGGRALKKGP WTAAEDGILI EYVKKHGEGN 60 WNAVQKHTGL ARCGKSCRLR WANHLRPNLK KGSFSQEEER VIIELHAKLG NKWARMAAQL 120 PGRTDNEIKN YWNTRMKRRQ RAGLPLYPLE IQQEAMAFHL QQHQHHHHHQ QQQQQHHSSS 180 AAAVATNFSA IRHKPDFNNN HPNSVSIFNF SSSINNSQKN FSDGSSFYAA PTSQFKFFPE 240 NNNGGRFALP LSPVSPFSQI GQQMNQSLST PPQASFQLNY GDNYVCNSTS GLNSMILGAP 300 YHHLIPGLET ELPSIQTPPL STTPASSGTS GGDGIMVGTN SGLLDVVLLE AEARSRNEKQ 360 SREETSSPGD LKQRTEQGST EEDDANLHVE SVLGSSGGEE AAAAENCSDE FSSSYSSSRK 420 KPRMEPLEEM NSMDDDDLMS LLNNFQSGMP VPEWYPGSSD DDLGINLHNG PSSRELNGNG 480 EEDDQRQKVA SPSTVSSSRV IEWSLGSSCW NNMPSIC

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MVESKGEKGR SEGEHHHHLA GGDGGDGGGD GGGRALKKGP WTAAEDGILI EYVKKHGEGN  60
WNAVQKHTGL ARCGKSCRLR WANHLRPNLK KGSFSQEEER VIIELHAKLG NKWARMAAQL  120
PGRTDNEIKN YWNTRMKRRQ RAGLPLYPLE IQQEAMAFHL QQHQHHHHHQ QQQQQHHSSS  180
AAAVATNFSA IRHKPDFNNN HPNSVSIFNF SSSINNSQKN FSDGSSFYAA PTSQFKFFPE  240
NNNGGRFALP LSPVSPFSQI GQQMNQSLST PPQASFQLNY GDNYVCNSTS GLNSMILGAP  300
YHHLIPGLET ELPSIQTPPL STTPASSGTS GGDGIMVGTN SGLLDVVLLE AEARSRNEKQ  360
SREETSSPGD LKQRTEQGST EEDDANLHVE SVLGSSGGEE AAAAENCSDE FSSSYSSSRK  420
KPRMEPLEEM NSMDDDDLMS LLNNFQSGMP VPEWYPGSSD DDLGINLHNG PSSRELNGNG  480
EEDDQRQKVA SPSTVSSSRV IEWSLGSSCW NNMPSIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	6e-72	MYB family protein