PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023554539.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 341aa    MW: 37852.4 Da    PI: 5.7075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023554539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++ +G+g+W+  ++  g++R++k+c++rw +yl
   XP_023554539.1 14 KGPWTPEEDQKLVSYIQIHGPGNWRNLPKNAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.78.8e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+  eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
   XP_023554539.1  67 RGRFAFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                      899999****************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MGRAPCCDKN GLKKGPWTPE EDQKLVSYIQ IHGPGNWRNL PKNAGLRRCG KSCRLRWTNY  60
LRPDIKRGRF AFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHTPRI DLLDLPSILT AAICSHPLLS LSTLLNNNQA AGLNSESLRL ISTLLAIKQE  180
DPNDNRFLLQ AQAQAQLQAQ MDTLSQLLQP NDNVNNANAS SMPISTTFVE CPNSQENLNF  240
LASNLSGGDV LVNQPNYVYG ENGSNGSNPT ASDLPEIWNN DVQNLGFDCG ISTPKSSPTP  300
LNSSSTCVNN SSSSNEDERD SYRSNFLQFE IPEGLDFADL M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-93MYB family protein