PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023554593.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 247aa    MW: 28940.5 Da    PI: 6.6014
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023554593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ede+l+ +v+++G  +W+  +r  g+ R++k+c++rw +yl
   XP_023554593.1 14 KGAWSPDEDEKLKAYVHKHGHCNWRELPRFAGLSRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.36.2e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE+ l++++++++G++ W++ a +++ gRt++++k++w+++l
   XP_023554593.1  67 RGNYTKEEERLILQLHQEHGNK-WSLMATKLP-GRTDNEIKNYWHTHL 112
                      899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MVRAPYFDEN GLKKGAWSPD EDEKLKAYVH KHGHCNWREL PRFAGLSRCG KSCRLRWINY  60
LCPDVKRGNY TKEEERLILQ LHQEHGNKWS LMATKLPGRT DNEIKNYWHT HLKKVKASKV  120
KKKQQNEAIS MKEREPEMKA NLISEVPSHE ILESSPFSPL SSEISTVCSN QESTQDSPPT  180
TFKFQEASNN NNGDFWDVPF LVDNLEAQSQ NPMFFHVNYD FEFDEADLFY QVMKELPENY  240
QPYLYPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.15e-55MYB family protein