PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023554649.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 280aa    MW: 32015.1 Da    PI: 8.4362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023554649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.1e-082469346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE + +  a + + ++   +W ++a++++ g+t  +++  ++ 
   XP_023554649.1 24 KWTKEENKMFESALAIYDKEtpdRWLKVAAMIP-GKTVGDVIKQYRE 69
                     8*****************99*************.******9999986 PP
2Myb_DNA-binding43.95.5e-14125169347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+++++++  ++G+g+W+ I+r + + +t+ q+ s+ qky
   XP_023554649.1 125 PWTEEEHKQFLRGLLKYGKGDWRNISRNFVNSKTPTQVASHAQKY 169
                      8*****************************9*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
METLYPSSHL STSAWFLLHN PTTKWTKEEN KMFESALAIY DKETPDRWLK VAAMIPGKTV  60
GDVIKQYREL EEDVCEIEAG RFPIPGYDLA SSFSFEFGDD RNFDVYRRKS CVGRGSDHER  120
KKGVPWTEEE HKQFLRGLLK YGKGDWRNIS RNFVNSKTPT QVASHAQKYF MRQLSGGKDK  180
RRPSIHDITT VNLTEATASE NEKLLPCLDQ NEKAGCYQKV LFDWKGATNG GLLGLGPNYS  240
DCVVSFPSGI VANGVKKEQH HRELKDAYYG TYSILHQIYR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.13e-92MYB family protein