PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554688.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 611aa MW: 68617.6 Da PI: 4.6819

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	356	399	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr l+Pk + K++Ka+iL A++++k+Lq XP_023554688.1 356 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 399 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MQSLMERLRP LVGSKSWDYC VLWKLSQDQR CVEWMDCCCA GTENGQNGGE ELGFPVSQVI 60 PCRDTAYPHP RASSCDLLAQ LPCSVPLNSG VYIQTLLSNE PKWLLFSNAM DSTALDETAG 120 TRVLIPFPFG LVELFVAKHA SEDQHVIDFV TIQCSISVEQ EAIINSSNMD TSFSVDVNAT 180 NEIQSKPFVA DRNAVLKDPE IQFEAPDSAA PTLENANVGY DISLDRIRLC SSPMNFLQQF 240 NYSSENRNKN EIFNECSQDS FLTAKQGNPY KFSAENEFQE VDTMQGSLMN TSNIHVQLKE 300 NSECKEQQGE EKDLVKHENG RSDSISDCSD QIDDEDDAIA KYRRRTGQGP QSKNLVAERK 360 RRKKLNERLY NLRALVPKIS KMDKASILGD AIDFVKELQK QVKELQDELE EHTDDENGKT 420 VVSGNNGNQN SVVQLPEFLS QNDKAQNSYH MGVLGSGSIL KQNHQDTEGT NNDKTQQMEP 480 QVEVAQIDGN EFFVKVFCEN KRGGFMRLME ALNALGLEVT NANVTSYRGL VSNVFKVGKK 540 DSEMVQADDV RDSLLEITKY PCRGWAEIVK APECIGSRME PNPHPHPHQH QTQNPFQDKA 600 IINSRLHLLN D

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MQSLMERLRP LVGSKSWDYC VLWKLSQDQR CVEWMDCCCA GTENGQNGGE ELGFPVSQVI  60
PCRDTAYPHP RASSCDLLAQ LPCSVPLNSG VYIQTLLSNE PKWLLFSNAM DSTALDETAG  120
TRVLIPFPFG LVELFVAKHA SEDQHVIDFV TIQCSISVEQ EAIINSSNMD TSFSVDVNAT  180
NEIQSKPFVA DRNAVLKDPE IQFEAPDSAA PTLENANVGY DISLDRIRLC SSPMNFLQQF  240
NYSSENRNKN EIFNECSQDS FLTAKQGNPY KFSAENEFQE VDTMQGSLMN TSNIHVQLKE  300
NSECKEQQGE EKDLVKHENG RSDSISDCSD QIDDEDDAIA KYRRRTGQGP QSKNLVAERK  360
RRKKLNERLY NLRALVPKIS KMDKASILGD AIDFVKELQK QVKELQDELE EHTDDENGKT  420
VVSGNNGNQN SVVQLPEFLS QNDKAQNSYH MGVLGSGSIL KQNHQDTEGT NNDKTQQMEP  480
QVEVAQIDGN EFFVKVFCEN KRGGFMRLME ALNALGLEVT NANVTSYRGL VSNVFKVGKK  540
DSEMVQADDV RDSLLEITKY PCRGWAEIVK APECIGSRME PNPHPHPHQH QTQNPFQDKA  600
IINSRLHLLN D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	343	364	RRRTGQGPQSKNLVAERKRRKK
2	358	365	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-124	bHLH family protein