PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554690.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 570aa MW: 63774.3 Da PI: 4.6852

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	315	358	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr l+Pk + K++Ka+iL A++++k+Lq XP_023554690.1 315 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 358 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MQSLMERLRP LVGSKSWDYC VLWKLSQDQR CVEWMDCCCA GTENGQNGGE ELGFPVSQVI 60 PCRDTAYPHP RASSCDLLAQ LPCSVPLNSG VYIQTLLSNE PKWLLFSNAM DSTALDETAG 120 TRVLIPFPFG LVELFVAKHA SEDQHVIDFV TIQCSISVEQ EAIINSSNMD TSFSVDVNAT 180 NEIQSKPFVA DRNAVLKDPE IQFEAPDSAA PTLENANDSF LTAKQGNPYK FSAENEFQEV 240 DTMQGSLMNT SNIHVQLKEN SECKEQQGEE KDLVKHENGR SDSISDCSDQ IDDEDDAIAK 300 YRRRTGQGPQ SKNLVAERKR RKKLNERLYN LRALVPKISK MDKASILGDA IDFVKELQKQ 360 VKELQDELEE HTDDENGKTV VSGNNGNQNS VVQLPEFLSQ NDKAQNSYHM GVLGSGSILK 420 QNHQDTEGTN NDKTQQMEPQ VEVAQIDGNE FFVKVFCENK RGGFMRLMEA LNALGLEVTN 480 ANVTSYRGLV SNVFKVGKKD SEMVQADDVR DSLLEITKYP CRGWAEIVKA PECIGSRMEP 540 NPHPHPHQHQ TQNPFQDKAI INSRLHLLND

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MQSLMERLRP LVGSKSWDYC VLWKLSQDQR CVEWMDCCCA GTENGQNGGE ELGFPVSQVI  60
PCRDTAYPHP RASSCDLLAQ LPCSVPLNSG VYIQTLLSNE PKWLLFSNAM DSTALDETAG  120
TRVLIPFPFG LVELFVAKHA SEDQHVIDFV TIQCSISVEQ EAIINSSNMD TSFSVDVNAT  180
NEIQSKPFVA DRNAVLKDPE IQFEAPDSAA PTLENANDSF LTAKQGNPYK FSAENEFQEV  240
DTMQGSLMNT SNIHVQLKEN SECKEQQGEE KDLVKHENGR SDSISDCSDQ IDDEDDAIAK  300
YRRRTGQGPQ SKNLVAERKR RKKLNERLYN LRALVPKISK MDKASILGDA IDFVKELQKQ  360
VKELQDELEE HTDDENGKTV VSGNNGNQNS VVQLPEFLSQ NDKAQNSYHM GVLGSGSILK  420
QNHQDTEGTN NDKTQQMEPQ VEVAQIDGNE FFVKVFCENK RGGFMRLMEA LNALGLEVTN  480
ANVTSYRGLV SNVFKVGKKD SEMVQADDVR DSLLEITKYP CRGWAEIVKA PECIGSRMEP  540
NPHPHPHQHQ TQNPFQDKAI INSRLHLLND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	323	RRRTGQGPQSKNLVAERKRRKK
2	317	324	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	8e-57	bHLH family protein