PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023871107.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 211aa    MW: 24545.2 Da    PI: 6.5431
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023871107.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.31.7e-221964449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ++  ++qvtfskRr+g++KKA+EL+vLC+aevav +fs++ ++y +
  XP_023871107.1 19 DDRGKQQVTFSKRRTGLFKKASELCVLCGAEVAVFVFSQKKNMYSF 64
                    677789**************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MTKGKKSIGR QRIEIKELDD RGKQQVTFSK RRTGLFKKAS ELCVLCGAEV AVFVFSQKKN  60
MYSFGHPNVE TILERYLDGK TVSDSSSLSQ ELVSVDEFNR QYDQLQKELE KEKMHLAEIE  120
EMNKKMKNTN FGFWWDEPLD ENMGLEEMEQ YMKALQEVRR KVGARIEELR IMPRTSLMQP  180
MNMPMGLGND FVNVNSWESN ACGGFVCWNN M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-35M-type_MADS family protein