PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023872079.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 267aa MW: 31079 Da PI: 6.7151

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023872079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.6e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l +++++G +W+ ++ g+ R++k+c++rw +yl XP_023872079.1 14 KGAWSVEEDNKLRAYIQRFGHWNWRELPKFAGLSRCGKSCRLRWMNYL 61 79****************99**********************97 PP
2	Myb_DNA-binding	49.2	1.2e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE+ +++++++lG++ W+ Ia+ + gRt++++k++w+ + XP_023872079.1 67 RGNYTEEEERMIIKLHEELGNK-WSMIAASLT-GRTDNDIKNHWHAH 111 899*****************.****9.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MVRTPFYDKN GLKKGAWSVE EDNKLRAYIQ RFGHWNWREL PKFAGLSRCG KSCRLRWMNY 60 LRPGVKRGNY TEEEERMIIK LHEELGNKWS MIAASLTGRT DNDIKNHWHA HLKKCTKNNP 120 TISKMKTLSN EAYQHDADLA RKTETDNYVS SSPSYQVMES SQLPLETSSI EFPSLSFDNA 180 PLFGINWIAE DNLTTLETLL EQSFSDFWTK PFIMDDIYIH NKYPVYLAEG GFCTSQPCYN 240 EGIDSIYKAM HDVKNYQGIN EDPYLLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	8e-53	MYB family protein